ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_173548

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1410)
DNA (1410bp) protein (470aa)
RND transporter n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037C7C6C
Cobalt-zinc-cadmium resistance protein czcA {ECO:0000313|EMBL:GAO55549.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acriflavin resistance protein
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1640..2581
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J4A3_9SPHN
LysR family transcriptional regulator ynfL {ECO:0000313|EMBL:GAO55547.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2655..3842
DNA (1188bp) protein (396aa)
Beta-lactamase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Q9_NOVAD
Beta-lactamase class C and other penicillin binding proteins {ECO:0000313|EMBL:GAO55546.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3862..5580)
DNA (1719bp) protein (573aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55545.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5681..6919)
DNA (1239bp) protein (413aa)
formyl-CoA transferase (EC:2.8.3.16)
CoA transferase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C2AA
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:GAO55544.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6998..8038)
DNA (1041bp) protein (347aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodococcus sp. JVH1 RepID=J2JBS8_9NOCA
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO55543.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8083..8469
DNA (387bp) protein (129aa)
Carboxymuconolactone decarboxylase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46S22_CUPPJ
Uncharacterized protein {ECO:0000313|EMBL:GAO55542.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
carboxymuconolactone decarboxylase
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8481..9440
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46S21_CUPPJ
Transposase {ECO:0000313|EMBL:GAO55541.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9490..11067)
DNA (1578bp) protein (526aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:GAO55540.1}; EC=6.2.1.3 {ECO:0000313|EMBL:GAO55540.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
long-chain-fatty-acid--CoA ligase (EC:2.3.1.86)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G917_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11142..11333)
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO55539.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11430..12167)
DNA (738bp) protein (246aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA60_STAND
Histidine utilization repressor {ECO:0000313|EMBL:GAO55538.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GntR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12164..13549)
DNA (1386bp) protein (462aa)
Formiminoglutamic iminohydrolase {ECO:0000313|EMBL:GAO55537.1}; EC=3.5.3.13 {ECO:0000313|EMBL:GAO55537.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative histidine degradation related amidohydrolase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FKF7_STRMK
N-formimino-L-glutamate deiminase
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13631..14836
DNA (1206bp) protein (402aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
imidazolonepropionase (EC:3.5.2.7)
imidazolonepropionase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C4EC
2019_SCN_bioreactor_t3_biofilm_scaffold_173548_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14833..15480
DNA (648bp) protein (216aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|SAAS:SAAS00083026}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|SAAS:SAAS00083026};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
histidine ammonia-lyase (EC:4.3.1.3)
histidine ammonia-lyase n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI00030E242D
Displaying 14 items

View Taxonomy