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2019_SCN_bioreactor_t3_biofilm_scaffold_167519

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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208..468
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS20_NOVAD
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsT; 30S ribosomal protein S20
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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895..2430
DNA (1536bp) protein (512aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCG0_NOVAD
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dnaA; chromosomal replication initiation protein
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2481..2888)
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z734_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53789.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2905..4365)
DNA (1461bp) protein (487aa)
Magnesium transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R3_NOVAD
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
magnesium transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4479..4934
DNA (456bp) protein (152aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R2_NOVAD
cyclophilin type peptidyl-prolyl cis-trans isomerase
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5148..6683
DNA (1536bp) protein (512aa)
Acetyl-CoA hydrolase {ECO:0000313|EMBL:GAO53786.1}; EC=3.1.2.1 {ECO:0000313|EMBL:GAO53786.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cat1; Succinyl-CoA:coenzyme A transferase (EC:2.8.3.-)
Propionyl-CoA:succinyl-CoA transferase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MHT1_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6697..7593)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036653A2
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO53785.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_167519_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7698..8996
DNA (1299bp) protein (433aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
malate synthase G (EC:2.3.3.9)
malate synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2FE5D
Displaying 8 items

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