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2019_SCN_bioreactor_t3_biofilm_scaffold_142623

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..608
DNA (606bp) protein (202aa)
signal recognition particle n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4EA84
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
signal recognition particle subunit FFH/SRP54 (srp54)
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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654..1112
DNA (459bp) protein (153aa)
30S ribosomal protein S16 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS16_NOVAD
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsP; 30S ribosomal protein S16
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1115..1603
DNA (489bp) protein (163aa)
ribosome maturation factor RimM n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47020
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
16S rRNA-processing protein RimM
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1656..1976
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO56303.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2077..3597
DNA (1521bp) protein (507aa)
Hypothetical beta-lactamase (Penicillin-binding protein) n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCI4_9SPHN
Beta-lactamase {ECO:0000313|EMBL:GAO56302.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative beta-lactamase precursor (penicillin-binding protein)
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3617..4357
DNA (741bp) protein (247aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=TRMD_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4361..4741
DNA (381bp) protein (127aa)
50S ribosomal protein L19 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL19_NOVAD
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplS; 50S ribosomal protein L19
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4967..7189
DNA (2223bp) protein (741aa)
dipeptidyl-peptidase IV (EC:3.4.14.5)
Dipeptidyl-peptidase IV, Serine peptidase, MEROPS family S09B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8H0_NOVAD
Dipeptidyl peptidase IV {ECO:0000313|EMBL:GAO56299.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7289..8314
DNA (1026bp) protein (342aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8G9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8432..9082
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002D7B9A4
Uncharacterized protein {ECO:0000313|EMBL:GAO56297.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DSBA oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9116..9550
DNA (435bp) protein (145aa)
Glutathione-dependent formaldehyde-activating,GFA n=2 Tax=Novosphingobium RepID=F6INI2_9SPHN
Gfa-like protein {ECO:0000313|EMBL:GAO56295.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldehyde-activating protein
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9547..10308
DNA (762bp) protein (254aa)
Alpha/beta hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8G8_NOVAD
Hydrolase {ECO:0000313|EMBL:GAO56294.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha/beta hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_142623_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10395..12077
DNA (1683bp) protein (561aa)
Peptidyl-dipeptidase A {ECO:0000313|EMBL:GAO56293.1}; EC=3.4.15.1 {ECO:0000313|EMBL:GAO56293.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidyl-dipeptidase A n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74C53
peptidyl-dipeptidase A
Displaying 13 items

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