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2019_SCN_bioreactor_t3_biofilm_scaffold_260513

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142..339
DNA (198bp) protein (66aa)
Cysteine desulfurase {ECO:0000313|EMBL:GAO54414.1}; EC=2.8.1.7 {ECO:0000313|EMBL:GAO54414.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Cysteine desulfurase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBX5_NOVAD
SufS subfamily cysteine desulfurase
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

336..827
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6R6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54413.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

827..1339
DNA (513bp) protein (171aa)
Putative acetyltransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8W0U6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54412.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GNAT family acetyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1336..1695
DNA (360bp) protein (120aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VAE9_SPHWW
Iron binding protein iscA for iron-sulfur cluster assembly {ECO:0000313|EMBL:GAO54411.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
iron-sulfur cluster assembly accessory protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1705..2385)
DNA (681bp) protein (227aa)
MFS transporter n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E141
Uncharacterized protein {ECO:0000313|EMBL:GAO54410.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_6
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2464..3831)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C6S2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79165.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3828..5228)
DNA (1401bp) protein (467aa)
Amidohydrolase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7S5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54408.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5253..7112)
DNA (1860bp) protein (620aa)
Amino acid/peptide transporter n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S123_9SPHN
Di/tripeptide permease yjdL {ECO:0000313|EMBL:GAO54407.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amino acid/peptide transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7323..7682
DNA (360bp) protein (120aa)
Transcriptional regulator, GntR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC10_NOVAD
Transcriptional regulator of gntR family {ECO:0000313|EMBL:GAO54406.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GntR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7841..8122
DNA (282bp) protein (94aa)
Histone-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC09_NOVAD
Integration host factor beta subunit {ECO:0000313|EMBL:GAO54405.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
histone-like DNA-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8521..9108
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B54EB6
Uncharacterized protein {ECO:0000313|EMBL:GAO54404.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9212..10855
DNA (1644bp) protein (548aa)
amine oxidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B751E2
Uncharacterized protein {ECO:0000313|EMBL:GAO54403.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10900..11313
DNA (414bp) protein (138aa)
polysaccharide biosynthesis protein GtrA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6550E
Uncharacterized protein {ECO:0000313|EMBL:GAO54402.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11310..13154
DNA (1845bp) protein (615aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z5J1_9SPHN
Mlr4739 protein {ECO:0000313|EMBL:GAO54401.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13204..13446)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HKF8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54400.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_260513_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13513..14958)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAZ5_9SPHN
TPR domain protein {ECO:0000313|EMBL:GAO54399.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 16 items

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