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2019_SCN_bioreactor_t3_biofilm_scaffold_222688

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..392
DNA (390bp) protein (130aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00055636}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00055636};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GLGC_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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389..1843
DNA (1455bp) protein (485aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GLGA_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1840..2172
DNA (333bp) protein (111aa)
Phosphoglucomutase {ECO:0000313|EMBL:GAO53887.1}; EC=5.4.2.2 {ECO:0000313|EMBL:GAO53887.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoglucomutase (EC:5.4.2.2)
Phosphoglucomutase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8J8_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2169..3386
DNA (1218bp) protein (406aa)
Phosphoglucomutase {ECO:0000313|EMBL:GAO53887.1}; EC=5.4.2.2 {ECO:0000313|EMBL:GAO53887.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoglucomutase (EC:5.4.2.2)
phosphoglucomutase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B502D0
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4007..5263
DNA (1257bp) protein (419aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
isoamylase (EC:3.2.1.68)
glycogen-debranching protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B48524
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5254..6885)
DNA (1632bp) protein (544aa)
4-cresol dehydrogenase [hydroxylating] flavoprotein subunit {ECO:0000313|EMBL:GAO53889.1}; EC=1.17.99.1 {ECO:0000313|EMBL:GAO53889.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
4-cresol dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7742D
twin-arginine translocation pathway signal protein
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6882..7199)
DNA (318bp) protein (106aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G427_NOVAD
4-cresol dehydrogenase [hydroxylating] cytochrome c subunit {ECO:0000313|EMBL:GAO53890.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c, class I
2019_SCN_bioreactor_t3_biofilm_scaffold_222688_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7347..7805)
DNA (459bp) protein (153aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7T3_NOVAD
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53891.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
Displaying 8 items

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