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2019_SCN_bioreactor_t3_biofilm_scaffold_273704

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..83)
DNA (81bp) protein (27aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO54806.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(87..902)
DNA (816bp) protein (272aa)
Phage shock protein A, PspA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G972_NOVAD
Phage shock protein A {ECO:0000313|EMBL:GAO54805.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phage shock protein A, PspA
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(899..1057)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G973_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54804.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1234..2259
DNA (1026bp) protein (342aa)
DNA-binding protein Fis n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G974_NOVAD
Psp operon transcriptional activator {ECO:0000313|EMBL:GAO54803.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Fis family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2383..3456
DNA (1074bp) protein (358aa)
DNA replication and repair protein RecF n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G975_NOVAD
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
recF; recombination protein F
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3457..4209)
DNA (753bp) protein (251aa)
Arylesterase {ECO:0000313|EMBL:GAO54801.1}; EC=3.1.1.2 {ECO:0000313|EMBL:GAO54801.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Lipolytic enzyme, G-D-S-L n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G976_NOVAD
G-D-S-L lipolytic protein
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4229..4918
DNA (690bp) protein (230aa)
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G977_NOVAD
ABC transporter ATP-binding protein yvcR {ECO:0000313|EMBL:GAO54800.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4915..7407
DNA (2493bp) protein (831aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G978_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54799.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7532..7801
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z364_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54798.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_273704_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7814..8053)
DNA (240bp) protein (80aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00037FE187
7-cyano-7-deazaguanine reductase
Displaying 10 items

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