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2019_SCN_bioreactor_t3_biofilm_scaffold_282911

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..716)
DNA (714bp) protein (238aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44BC1
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1040..1519
DNA (480bp) protein (160aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6T0_NOVAD
Peroxiredoxin {ECO:0000313|EMBL:GAO55988.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alkyl hydroperoxide reductase
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1588..2307)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036F2C97
Uncharacterized protein {ECO:0000313|EMBL:GAO55987.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2307..2771)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTR5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55986.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2890..3318)
DNA (429bp) protein (143aa)
thioesterase n=1 Tax=Sphingomonas wittichii RepID=UPI0002ED77A4
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABQ69118.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3353..3964)
DNA (612bp) protein (204aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GTP cyclohydrolase (EC:3.5.4.16)
GTP cyclohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3E727
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4182..4493)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4C5AF
Cell division protein divIC (FtsB), stabilizes ftsL against rasP cleavage {ECO:0000313|EMBL:GAO55983.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
septum formation initiator
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4596..4748)
DNA (153bp) protein (51aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO55982.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4814..5065)
DNA (252bp) protein (84aa)
translation initiation factor IF-1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B400FE
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
infA; translation initiation factor IF-1
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5070..5276)
DNA (207bp) protein (69aa)
Cold-shock DNA-binding protein family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G551_NOVAD
Cold shock protein cspA {ECO:0000313|EMBL:GAO55980.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cold-shock DNA-binding protein family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5616..6143)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37F74
Uncharacterized protein {ECO:0000313|EMBL:GAO55979.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6192..7037)
DNA (846bp) protein (282aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z9L5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55978.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_282911_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7047..7412)
DNA (366bp) protein (122aa)
Glutaredoxin 3 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9L4_9SPHN
Glutaredoxin 3 {ECO:0000313|EMBL:GAO55977.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutaredoxin
Displaying 13 items

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