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2019_SCN_bioreactor_t3_biofilm_scaffold_202484

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..525
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5T1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55410.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(650..2275)
DNA (1626bp) protein (542aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lysK; lysyl-tRNA synthetase (EC:6.1.1.6)
lysyl-tRNA synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F45C
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2446..3273)
DNA (828bp) protein (276aa)
Flagellin/flagellar hook associated protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZTI2_9SPHN
Flagellin protein flaA {ECO:0000313|EMBL:GAO55408.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellin
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3541..6336
DNA (2796bp) protein (932aa)
Helicase c2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5S5_NOVAD
DinG family ATP-dependent helicase yoaA {ECO:0000313|EMBL:GAO55407.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
helicase c2
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6333..6878
DNA (546bp) protein (182aa)
Putative phosphohistidine phosphatase, SixA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Q1_9SPHN
Phosphohistidine phosphatase sixA {ECO:0000313|EMBL:GAO55406.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphohistidine phosphatase SixA
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6875..7315)
DNA (441bp) protein (147aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36111
Transcriptional regulator of MERR family {ECO:0000313|EMBL:GAO55405.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MerR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7312..7611)
DNA (300bp) protein (100aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6B942
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ihfA; integration host factor subunit alpha
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7720..8694)
DNA (975bp) protein (325aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=FABH_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8694..9506)
DNA (813bp) protein (271aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Phosphate acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PLSX_NOVAD
glycerol-3-phosphate acyltransferase PlsX
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9534..9713)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4C0E3
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000255|HAMAP-Rule:MF_00340}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9928..10317
DNA (390bp) protein (130aa)
Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55400.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10362..11030)
DNA (669bp) protein (223aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R7_NOVAD
Hypothetical metal-binding enzyme, ycbL homolog {ECO:0000313|EMBL:GAO55399.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11101..11778)
DNA (678bp) protein (226aa)
Putative phage repressor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R6_NOVAD
Peptidase {ECO:0000313|EMBL:GAO55398.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phage repressor
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11875..12078
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55397.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12068..12442
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55396.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12534..16772)
DNA (4239bp) protein (1413aa)
Multihem cytochrome n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55395.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
multiheme cytochrome
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16751..18910)
DNA (2160bp) protein (720aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R2_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55394.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_202484_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18907..19926)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5R1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55393.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 18 items

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