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2019_SCN_bioreactor_t3_biofilm_scaffold_259284

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..511
DNA (510bp) protein (170aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH19_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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674..1858
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKC8_9SPHN
Mlr3471 protein {ECO:0000313|EMBL:GAO55138.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1855..2736
DNA (882bp) protein (294aa)
Transcription factor jumonji, jmjC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9G3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55137.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcription factor jumonji, jmjC
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2768..3670
DNA (903bp) protein (301aa)
palmitoyl-CoA hydrolase (EC:3.1.2.2)
Palmitoyl-CoA hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9G4_NOVAD
Acyl-CoA thioesterase II {ECO:0000313|EMBL:GAO55136.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3760..4923
DNA (1164bp) protein (388aa)
Peptidase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDT5_PHEZH
Secreted peptidase {ECO:0000313|EMBL:GAO55135.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4931..6868)
DNA (1938bp) protein (646aa)
UvrABC system protein C n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=UVRC_NOVAD
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
uvrC; excinuclease ABC subunit C
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7078..7323
DNA (246bp) protein (82aa)
Translation initiation factor IF-1 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDI0_9SPHN
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
infA; translation initiation factor IF-1
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7323..7928
DNA (606bp) protein (202aa)
Maf-like protein Saro_1057 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Y1057_NOVAD
Maf-like protein NMD1_02237 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
maf protein
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7921..8913
DNA (993bp) protein (331aa)
Ribonuclease n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9H2_NOVAD
Ribonuclease {ECO:0000313|EMBL:GAO55131.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribonuclease
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8910..9092
DNA (183bp) protein (61aa)
DNA gyrase inhibitor YacG n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9H3_NOVAD
hypothetical protein
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_259284_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9444..9845)
DNA (402bp) protein (134aa)
Glutathione S-transferase {ECO:0000313|EMBL:GAO55129.1}; EC=2.5.1.18 {ECO:0000313|EMBL:GAO55129.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00036A896D
glutathione S-transferase family protein
Displaying 11 items

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