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2019_SCN_bioreactor_t3_biofilm_scaffold_296249

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..310)
DNA (309bp) protein (103aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO54740.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO54740.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA03_NOVAD
short chain dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(334..885)
DNA (552bp) protein (184aa)
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:GAO54739.1}; EC=3.6.1.13 {ECO:0000313|EMBL:GAO54739.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NUDIX hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA02_NOVAD
NUDIX hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(882..1562)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA01_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54738.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1564..2358)
DNA (795bp) protein (265aa)
methanol dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B679B8
Beta-propeller domains of methanol dehydrogenase type {ECO:0000313|EMBL:GAO54737.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2369..3064)
DNA (696bp) protein (232aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70F5E
LemA family protein {ECO:0000313|EMBL:GAO54736.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lemA; hypothetical LemA-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3215..3661
DNA (447bp) protein (149aa)
Large-conductance mechanosensitive channel n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=MSCL_NOVAD
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
mscL; large-conductance mechanosensitive channel
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4250..5863)
DNA (1614bp) protein (538aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA78_NOVAD
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO54733.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5883..6944)
DNA (1062bp) protein (354aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase {ECO:0000313|EMBL:GAO54732.1}; EC=4.1.1.45 {ECO:0000313|EMBL:GAO54732.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Amidohydrolase 2 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKZ6_9SPHN
amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6979..7683)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B39792
Uncharacterized protein {ECO:0000313|EMBL:GAO54731.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7777..9207)
DNA (1431bp) protein (477aa)
2-ketoglutaric semialdehyde dehydrogenase {ECO:0000313|EMBL:GAO54730.1}; EC=1.2.1.26 {ECO:0000313|EMBL:GAO54730.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
succinate semialdehyde dehydrogenase (EC:1.2.1.16)
Succinate semialdehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA81_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9212..9952)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA82_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54729.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10012..11448)
DNA (1437bp) protein (479aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA83_NOVAD
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO54728.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11641..12555
DNA (915bp) protein (305aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA84_NOVAD
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAO54727.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12677..13597
DNA (921bp) protein (307aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA85_NOVAD
Dehydrogenases with different specificities {ECO:0000313|EMBL:GAO54726.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13750..14421)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C8_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27295.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14426..15301)
DNA (876bp) protein (292aa)
5,10-methylenetetrahydrofolate reductase {ECO:0000313|EMBL:GAO54725.1}; EC=1.5.1.20 {ECO:0000313|EMBL:GAO54725.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Methylenetetrahydrofolate reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C7_NOVAD
methylenetetrahydrofolate reductase
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15380..16780)
DNA (1401bp) protein (467aa)
glycine cleavage system protein T (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C6_NOVAD
Similar to vanillate/3-O-methylgallate O-demethylase {ECO:0000313|EMBL:GAO54724.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16904..17758
DNA (855bp) protein (285aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
purU; formyltetrahydrofolate deformylase (EC:3.5.1.10)
formyltetrahydrofolate deformylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4685B
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17835..18236
DNA (402bp) protein (134aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54722.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18260..18997)
DNA (738bp) protein (246aa)
Alpha/beta hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54721.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha/beta hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19028..19804)
DNA (777bp) protein (259aa)
protein ligF n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6602B
Glutathione S-transferase {ECO:0000313|EMBL:GAO54720.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione S-transferase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_296249_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19827..20135)
DNA (309bp) protein (103aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C1_NOVAD
Oxidoreductase of short-chain dehydrogenase/reductase family {ECO:0000313|EMBL:GAO54719.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
Displaying 22 items

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