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2019_SCN_bioreactor_t3_biofilm_scaffold_213369

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..782
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56211.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

779..1060
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56210.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1063..1470
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56209.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1678..1995
DNA (318bp) protein (106aa)
Putative ATP synthase protein I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R4_NOVAD
ATP synthase protein I {ECO:0000313|EMBL:GAO56208.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATP synthase I
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2039..2821
DNA (783bp) protein (261aa)
ATP synthase F0F1 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ATP6_NOVAD
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2918..3145
DNA (228bp) protein (76aa)
ATP synthase F0 sector subunit c {ECO:0000313|EMBL:GAO56206.1}; EC=3.6.3.14 {ECO:0000313|EMBL:GAO56206.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
F0F1 ATP synthase subunit C n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B524ED
H+-transporting two-sector ATPase, C subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3228..3722
DNA (495bp) protein (165aa)
ATP synthase subunit b n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R1_NOVAD
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
H+-transporting two-sector ATPase subunit B/B'
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3715..4281
DNA (567bp) protein (189aa)
ATP synthase subunit B n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B48DD8
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
H+-transporting two-sector ATPase subunit B/B'
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..5401)
DNA (1032bp) protein (344aa)
LacI family transcription regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B71685
Transcriptional regulators {ECO:0000313|EMBL:GAO56203.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LacI family transcription regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5430..6194)
DNA (765bp) protein (255aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z878_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6291..6614)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D9W7_SPHYA
putative endonuclease
GIY-YIG nuclease superfamily protein {ECO:0000313|EMBL:AKH43837.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6784..7206)
DNA (423bp) protein (141aa)
30S ribosomal protein S1 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J6L1_9SPHN
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsA; 30S ribosomal protein S1
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7158..8225)
DNA (1068bp) protein (356aa)
30S ribosomal protein S1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Q7_NOVAD
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsA; 30S ribosomal protein S1
2019_SCN_bioreactor_t3_biofilm_scaffold_213369_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8688..9236
DNA (549bp) protein (183aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z880_9SPHN
Histone acetyltransferase HPA2 and related acetyltransferases {ECO:0000313|EMBL:GAO56200.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GCN5-like N-acetyltransferase
Displaying 14 items

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