ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_5458_1

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 1..3120

Top 3 Functional Annotations

Value Algorithm Source
amidohydrolase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036E6702 similarity UNIREF
DB: UNIREF100
  • Identity: 50.2
  • Coverage: 1067.0
  • Bit_score: 1041
  • Evalue 0.0
TolB protein {ECO:0000313|EMBL:GAO53640.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.2
  • Coverage: 1039.0
  • Bit_score: 1977
  • Evalue 0.0
amidohydrolase family protein similarity KEGG
DB: KEGG
  • Identity: 41.4
  • Coverage: 1056.0
  • Bit_score: 715
  • Evalue 1.70e-203

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3120
CTCGTGGCCGGGCCTCTTCGCGCCGAAGAGGCCCGGTCGCTTGCCTATCAGGCGACCGAGGTGACCTGGGCGCAGCCGGCGCTGTCGCCGGACGGCGCGTGGCTGTGGTTCGATCTGCTGGGCGACATCTACCGTATGCCGGCCGCTGGTGGCGATGCGCAGCCGGTGCTCGCCGGGCCTGCCTTCGAACGCAACCCGGTGCCTTCGCCCGACGGGCGCTGGATCGCCTTCATTTCCGACCGGTCGGGCGTCACCAACCTGTGGATCGCGCGCAGCGACGGCAGCGATGCGAGGCAACTGACGCACGATAACGCGCTCGTCCTGATGACCTCGCCGGCATGGGCGCCGGACGGGAAAAGCGTCTACGTCAGCCGCGCCGTCCACGCGGTGCTGGCGTTCGAACTGTGGCGCGTTCCCGTCGATGGCAGTCCGCCCGCGCTGCTCGTGGCGGCCCAGCCCGGCGGCAACGAAGGGTGGGACGAGCGTATCAACGCCATGGGCGCGGCTCCTTCGCCCGACGGGAAGGCGGTGTGGTACGCGACCAAGCTGGGCCACACCTGGACCGAAAAGGACCCGCCCACCTGGTCCATCGCGCGGCGCGATCTGGCCTCCGGCGCGGTCGAGACGGTGGTCCCCGGCGGGATGCATCCGGTGCTCTCGCCCGATGGGCGGTCGCTCGCCTATGCCGCGCGGCGCGATGGCGGCGAAACCGGGCTGCGCCTGCGCAACCTCGATACCGGCGAGGACCGCTGGATCGCCTGGCCGATCGATCACGATGGGCAGGAAGGCGGCTACTACTACGATCTAACTCCGGGCTACCGCTTCACGCCCGACGGCAAGGCCATCGTGCTCGCGCGCAATGGCGGCTTCATGCGGCTCGATCTTGTCACCGGAAAGCAGCAGGCGATCCCGTTCCGCGCGCCGGTGCGGCTGGCGCTGGCGCCGCAAAGCCGCGTGCGCCAGCAGGTTGAGGATGGCAGCGAGGTCCGGACGCATCTGGCCGAAGGCGCCGCGCTGTCGCCGGACGGCCGGCGGATCGCCTTCACCGCGCTGGGCGCGCTGTACATCGCCGATGCGCAAGGCACCGCCGCACCGCGCAAGCTGTTCGATGGCAACGCCTTCCAGCCAGCCTGGTCGCCGGACGGGCGCACGCTGGCCTTCACGCGCTGGACCGCCGAGCAGGGCGGCGGCATCTGGACGGTCGATGCGGCCGGCGGCGCGCCGCGTGCCGCCGGCCCGCCCCGTTCTGCCGGACCGCAGGGCGCCTACTGGTCCGAACCGCTGTGGGATCGCGATGGCAAAAGCCTGATCGCGCTGCGCGCCGCGCAATTCGATCGCCTTCACGCGCCGGACGAGCTGGCCCCGGCGTGGCTGGTCGATGTGGTGCGCCTTTCCCCCGCTGGCGCCGCGACGGTCATCGGCCATGGCGCGGGTCTGCGTTCGCTTCAGCGGACGGCGGACGGGCGTCTGTTCGTCCAGGCCGATGGCGCGCTCAAGGAAGTGATGGCCGACGGCACGCTGCTGGCGCGCGCGACGGTCGTCGCCCGCGCGATGGGGCAATACGTCAAGGAGCCGCGCCCGGTCGAGGAACTGCGCCTGTCGCCCGATGGCCGGTCGCTGGCGGCGCGCACCGCGTTCGAGCTGCACCTTCTGCCGATGCCGGCCGACGCCAGGCCGGTGAACCTGATGGAAACCGTCCCGGGCCACCGCCAGATTACCCGGATCGGCGCCGATACGATGCGCTGGGAAGGCGATGGCCTGTCGTGGACGGTCGGGCCGTTCTGGCGTCACGCCGCCTCGGCCGGCACGCTGGCGGCTGCCGACCCCGAAGCTGCGGCAGCCTCGCGCGATCTGTCGGTCCGCGTGCCGCGTGCCCTGCCGGCGCAGGCGCAACTGCTGCGCGGCGCTACCGTGCTGACGATGGACCATGGGAAGGTCGTCACCGATGCCGACCTGCTGATAACCGGTGACCGCATCGCCGCGATCGGCCCGCGTGGGTCCATCGCCGTTCCGGCCGGCGCGCGGATACGCGAGCTGGGCGGCAAGTTCGTCATGCCCGGCCTGATCGACGCGCACGCCCATTTCTTCCCGATCCCGCGCGGGGTGCACGACGGCACGCACTGGGAATTCCCCACGCTGCTCGCCTATGGCGTCACCGCGGTGCTGGAAGTGCAGCCGTTCACGCCGGACATCTTTGCTTATGCCGACCGGATGGACGCGGGGCTTTCCACGGGGCCGCGCCTGTTCAGCACCGGCCCCGGCGTGTTCGTGAACAGCGCCATCACCGCACAGGCCGTGGCCGAACAGGTGTTGACGCGCTATCGCGACGCCTATCGCACGCGCAATATCAAGAGCTACATGGTCGGCGACCGGGCCGCGCGGCAATATATGGCGGCTGCATCGCGCAAGCTGGGCATGATGCCCACCACCGAAGGCGCGGCCGATTTCGTGCTGGAGCTGACCCACGCCATCGATGGCTTTTCCGGCAACGAGCATAACCTGCCCGTCACGCCCATCCACGATGACGTGATCCGCCTCTTCGCCGCCAGCGGCATTGCCTACACGCCGACGCTGACCGTGCTTTACGGCGGCGCGCCGATGCTGTTCGCCGATATCCAGAACGATCGCCCGCAGGACGATCCGCGCCTGCGCCGGTTCACCCCGCCGTTCGTGCTGGCCGCCAAGCTGCGCGACCGGCACTGGACGCTGCCCGAATGGCAGACGTGGCGGCGCTTTGCCGAAGACGCGATGCGGTTGCGCCGCGCCGGCACGCTGGTCGGCGTGGGCAGTCATGGCGAGATGCAGGGCATCGGCGTCCATTGGGAAATGGCCGCGTTCGTGGCCGGCGGCGCCACGCCGCAAGAAGCGCTGGAAATGGCCACGATCGACAACGCCACGATCATCGGCCGGCCAGATGATCTGGGCAGCGTGACGCCCGGCAAGCTCGCCGACCTCGTGGTGCTCGATGCCGATCCCCGCGCCGACATCGCCAATGCCCGGCGCATCGCGCTGGTGCTGCGCGGCGGCATCGCGTTCGACGGCACCACGCTGGCGCGCGACGGCGAAAGCCCGGTCGTGCCGTGGTGGCGCGAAGAGTCATCCGGGGTGGCCCCGCAATGA
PROTEIN sequence
Length: 1040
LVAGPLRAEEARSLAYQATEVTWAQPALSPDGAWLWFDLLGDIYRMPAAGGDAQPVLAGPAFERNPVPSPDGRWIAFISDRSGVTNLWIARSDGSDARQLTHDNALVLMTSPAWAPDGKSVYVSRAVHAVLAFELWRVPVDGSPPALLVAAQPGGNEGWDERINAMGAAPSPDGKAVWYATKLGHTWTEKDPPTWSIARRDLASGAVETVVPGGMHPVLSPDGRSLAYAARRDGGETGLRLRNLDTGEDRWIAWPIDHDGQEGGYYYDLTPGYRFTPDGKAIVLARNGGFMRLDLVTGKQQAIPFRAPVRLALAPQSRVRQQVEDGSEVRTHLAEGAALSPDGRRIAFTALGALYIADAQGTAAPRKLFDGNAFQPAWSPDGRTLAFTRWTAEQGGGIWTVDAAGGAPRAAGPPRSAGPQGAYWSEPLWDRDGKSLIALRAAQFDRLHAPDELAPAWLVDVVRLSPAGAATVIGHGAGLRSLQRTADGRLFVQADGALKEVMADGTLLARATVVARAMGQYVKEPRPVEELRLSPDGRSLAARTAFELHLLPMPADARPVNLMETVPGHRQITRIGADTMRWEGDGLSWTVGPFWRHAASAGTLAAADPEAAAASRDLSVRVPRALPAQAQLLRGATVLTMDHGKVVTDADLLITGDRIAAIGPRGSIAVPAGARIRELGGKFVMPGLIDAHAHFFPIPRGVHDGTHWEFPTLLAYGVTAVLEVQPFTPDIFAYADRMDAGLSTGPRLFSTGPGVFVNSAITAQAVAEQVLTRYRDAYRTRNIKSYMVGDRAARQYMAAASRKLGMMPTTEGAADFVLELTHAIDGFSGNEHNLPVTPIHDDVIRLFAASGIAYTPTLTVLYGGAPMLFADIQNDRPQDDPRLRRFTPPFVLAAKLRDRHWTLPEWQTWRRFAEDAMRLRRAGTLVGVGSHGEMQGIGVHWEMAAFVAGGATPQEALEMATIDNATIIGRPDDLGSVTPGKLADLVVLDADPRADIANARRIALVLRGGIAFDGTTLARDGESPVVPWWREESSGVAPQ*