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2019_SCN_bioreactor_t3_biofilm_scaffold_5458

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..3120
DNA (3120bp) protein (1040aa)
amidohydrolase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036E6702
TolB protein {ECO:0000313|EMBL:GAO53640.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3117..4223
DNA (1107bp) protein (369aa)
peptidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B60A76
Uncharacterized protein {ECO:0000313|EMBL:GAO53639.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4220..4378
DNA (159bp) protein (53aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5DC5C
Uncharacterized protein {ECO:0000313|EMBL:GAO53638.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4498..6168)
DNA (1671bp) protein (557aa)
amidohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C8AB
Exoenzymes regulatory protein aepA in lipid-linked oligosaccharide synthesis cluster {ECO:0000313|EMBL:GAO53637.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative TIM-barrel fold metal-dependent hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6264..6575)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036D4290
Transcriptional regulator of arsR family {ECO:0000313|EMBL:GAO53636.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ArsR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6572..9796)
DNA (3225bp) protein (1075aa)
multidrug transporter AcrB n=1 Tax=Sphingobium xenophagum RepID=UPI00035E5FFF
Cobalt-zinc-cadmium resistance protein czcA {ECO:0000313|EMBL:GAO53635.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acriflavin resistance protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9796..10857)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035C83BB
RND efflux membrane fusion protein {ECO:0000313|EMBL:GAO53634.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RND family efflux transporter MFP subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11047..12327
DNA (1281bp) protein (427aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sphingobium xenophagum RepID=UPI0003640F47
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:GAO53633.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12340..12543
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RRE8_ASTEC
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:GAO53632.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12556..13851
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035DCF1A
Type I secretion outer membrane protein, tolC {ECO:0000313|EMBL:GAO53631.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TolC family type I secretion outer membrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13921..15129)
DNA (1209bp) protein (403aa)
NADH dehydrogenase {ECO:0000313|EMBL:GAO53630.1}; EC=1.6.99.3 {ECO:0000313|EMBL:GAO53630.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDB8_BEII9
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15290..15832)
DNA (543bp) protein (181aa)
Transcriptional regulator, BadM/Rrf2 family n=5 Tax=Serratia RepID=G0BCX7_SERSA
Uncharacterized protein {ECO:0000313|EMBL:GAO53629.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15913..16707)
DNA (795bp) protein (265aa)
amidohydrolase n=1 Tax=Sphingomonas wittichii RepID=UPI000374DB7B
Exoenzymes regulatory protein aepA {ECO:0000313|EMBL:GAO53628.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase 3
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16746..17405)
DNA (660bp) protein (220aa)
Amidohydrolase 3 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V802_SPHWW
Exoenzymes regulatory protein aepA {ECO:0000313|EMBL:GAO53628.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase 3
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17476..19629)
DNA (2154bp) protein (718aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI0003776F35
Uncharacterized protein {ECO:0000313|EMBL:GAO53627.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19817..20914
DNA (1098bp) protein (366aa)
Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V801_SPHWW
Transcriptional regulatory protein {ECO:0000313|EMBL:GAO53626.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
regulatory protein LuxR
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21062..21622
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFF8_NOVAD
Succinyl-CoA synthetase, alpha subunit {ECO:0000313|EMBL:GAO53625.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21723..22673
DNA (951bp) protein (317aa)
Putative Fis family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK37_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:GAO53624.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative Fis family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22837..24363
DNA (1527bp) protein (509aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:GAO53623.1}; EC=1.2.1.3 {ECO:0000313|EMBL:GAO53623.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aldehyde dehydrogenase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVD8_9SPHN
NAD-dependent aldehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24431..25462
DNA (1032bp) protein (344aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO53622.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO53622.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase GroES-like domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVD9_9SPHN
adh; Zn-dependent alcohol dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_21
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25866..26210)
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC25631.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26479..28995
DNA (2517bp) protein (839aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034681A6
Uncharacterized protein {ECO:0000313|EMBL:GAO53620.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29064..30308
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003468AC3
Uncharacterized protein {ECO:0000313|EMBL:GAO53619.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30320..31507
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F7573B
Uncharacterized protein {ECO:0000313|EMBL:GAO53618.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31716..34040)
DNA (2325bp) protein (775aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VE81_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO53617.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34320..35873)
DNA (1554bp) protein (518aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:GAO53616.1}; EC=1.2.1.3 {ECO:0000313|EMBL:GAO53616.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldehyde dehydrogenase (acceptor) (EC:1.2.99.3)
Aldehyde dehydrogenase (Acceptor) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFF9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36148..37134
DNA (987bp) protein (329aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFG0_NOVAD
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:GAO53615.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37226..37612
DNA (387bp) protein (129aa)
ArsR family transcriptional regulator n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000316DE62
ArsR family transcriptional regulator {ECO:0000313|EMBL:KHK91612.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
ArsR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37609..38682
DNA (1074bp) protein (358aa)
Arsenical-resistance protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEG4_NOVAD
arsenical-resistance protein
Arsenical-resistance protein {ECO:0000313|EMBL:ABP64325.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_5458_30
Sphingomonas sp. KA1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38699..39127
DNA (429bp) protein (143aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=164608 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. KA1.;"
Putative arsenate reductase n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJB8_9SPHN
arsenate reductase
Displaying items 1-30 of 68 in total

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