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2019_SCN_bioreactor_t3_biofilm_scaffold_5458_16

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 19817..20914

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V801_SPHWW similarity UNIREF
DB: UNIREF100
  • Identity: 43.2
  • Coverage: 359.0
  • Bit_score: 246
  • Evalue 2.20e-62
Transcriptional regulatory protein {ECO:0000313|EMBL:GAO53626.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.7
  • Coverage: 365.0
  • Bit_score: 705
  • Evalue 3.10e-200
regulatory protein LuxR similarity KEGG
DB: KEGG
  • Identity: 43.2
  • Coverage: 359.0
  • Bit_score: 246
  • Evalue 6.20e-63

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1098
ATGCTCTGTTCCAATGTCCTGGGCGATCTCTACGGGGCCAGCATGGACCGTCCGCGCCTTGCCACGGCGCTGGACCGGTTGCGCACGCAAACCGGCGCGCGCAGCGTCACAATCCACTGGTTTAATCGCACGCCCGACCGCCTGCGCCATCGCTGGCTGGCGACCTGTTCGGCGACCCCGGCGCCCGCCGGCGAACTCTCGCTGCTGGACGACCTCAATCCGCGCACCATCGTCGCGGTGAATCCCGTCCACGACGGCGTCTATATGCTGGAGGACGACAATTGCCCGGATGCCCTGCAGGGGCAGTTCCACCAATGGCAGGCGCGCCTGCGCGAACAGGGACTGGGCCAGTTCCTCGGCGCGCGCATCGCCATGGGGGCGCTGGGCGAGGCCGGGCTAGCTGTCCATGCCGGGGTCGGCACGCCGCTGGCGGCGCATTGCCGGCAGACGCTGACCGATCTTATGCCGCACGTGCGCGAAGCGCTGCGCTTGATGATCGAGACCGATCGCCGCGCCGATGAAAACGCCATGCTGCGGCACGTGATGGACCGCATACAGTTCGCGCTGGCGATCTGTGACGATGCGGGGCGGGTTCAGATCGCCAATCCGGCGGCGCGCGGCCTGCTGGAAGGCCTGGTGGTGCGCCTGCCGGGGATGGCGGACGCGGAATGGCGGCTGATCGAGGGGCTGCGTCCCTTGCTGCTTGCCGGCTCCCCTGGCGCGATGCGGTGGCGCAACGGGGATCGCGAGGTGCTGCTACACGCCGTCGCCTTGCCCCGCTTCGCGCTGGAGCGGTACGCCATCGCGGGCGAACGGCGGGCCTTCGCGCTGGCGCTGGCTGACGCCGGCGGGCCGCCACCGCCATCGCCGGCCGACCTTCGTGCCTTTTTCGCGCTGACCCCGTCCGAGGCCGATCTGCTGGCGCGTTTGTGCGGCGGCGACGATGTCGCCACGTTCGCGCAGGCGCGCGGCGTTTCGATCCACACCGCGCGCACGCAGCTCAAGCAGGTCATGGCCAAGACACGGGCGAGCCGCCAGGCCGATCTGATCCGGCTGGCGCTGGCCAGCCCCTCGCACCTGTTCGGGCGATCGAACTGA
PROTEIN sequence
Length: 366
MLCSNVLGDLYGASMDRPRLATALDRLRTQTGARSVTIHWFNRTPDRLRHRWLATCSATPAPAGELSLLDDLNPRTIVAVNPVHDGVYMLEDDNCPDALQGQFHQWQARLREQGLGQFLGARIAMGALGEAGLAVHAGVGTPLAAHCRQTLTDLMPHVREALRLMIETDRRADENAMLRHVMDRIQFALAICDDAGRVQIANPAARGLLEGLVVRLPGMADAEWRLIEGLRPLLLAGSPGAMRWRNGDREVLLHAVALPRFALERYAIAGERRAFALALADAGGPPPPSPADLRAFFALTPSEADLLARLCGGDDVATFAQARGVSIHTARTQLKQVMAKTRASRQADLIRLALASPSHLFGRSN*