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cn_combo_scaffold_1450

Alias: BURK59_21

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1450_1
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..249)
DNA (249bp) protein (83aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VWU5_POLNA
transposase IS116/IS110/IS902 family protein
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:ABM40123.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="
cn_combo_scaffold_1450_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249..887)
DNA (639bp) protein (213aa)
transposase IS116/IS110/IS902 family protein; K07486 transposase id=5083438 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transposase IS116/IS110/IS902 family protein; K07486 transposase Tax=GWE1_Burkholderiales_65_30_curated
transposase IS116/IS110/IS902 family protein
cn_combo_scaffold_1450_3
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1193..3166)
DNA (1974bp) protein (658aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNN5_9BURK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
hypothetical protein
cn_combo_scaffold_1450_4
Neisseria subflava, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3470..3862
DNA (393bp) protein (131aa)
DoxX family protein n=1 Tax=Neisseria flavescens NRL30031/H210 RepID=C0EQA3_NEIFL
DoxX family protein {ECO:0000313|EMBL:EFC53318.1}; TaxID=546268 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria subflava NJ9703.;"
DoxX protein
cn_combo_scaffold_1450_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3914..4504)
DNA (591bp) protein (197aa)
nlp/p60 protein id=12552127 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
nlp/p60 protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
nlp/p60 protein
cn_combo_scaffold_1450_6
unknown

Not on your lists

4748..4996
DNA (249bp) protein (83aa)

This feature has no annotations

cn_combo_scaffold_1450_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5021..5989)
DNA (969bp) protein (323aa)
rRNA methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037DD18B
rRNA methylases {ECO:0000313|EMBL:GAD24769.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
tRNA/rRNA methyltransferase SpoU
cn_combo_scaffold_1450_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5986..6609)
DNA (624bp) protein (208aa)
ribonuclease h (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease HII n=2 Tax=Alicycliphilus denitrificans RepID=E8TT82_ALIDB
cn_combo_scaffold_1450_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6584..7726)
DNA (1143bp) protein (381aa)
lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=1603291 species="B
Lipid-A-disaccharide synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TT81_ALIDB
cn_combo_scaffold_1450_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7741..8529)
DNA (789bp) protein (263aa)
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
UDP-N-acetylglucosamine acyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F7E96
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMA
cn_combo_scaffold_1450_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8543..8986)
DNA (444bp) protein (148aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-] id=12551935 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
fabZ; 3-hydroxyacyl-ACP dehydratase (EC:4.2.1.-)
cn_combo_scaffold_1450_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8983..9984)
DNA (1002bp) protein (334aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhold
UDP-3-O-acylglucosamine N-acyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TT78_ALIDB
udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase
cn_combo_scaffold_1450_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10010..10543)
DNA (534bp) protein (178aa)
Outer membrane chaperone Skp (OmpH) n=2 Tax=Alicycliphilus denitrificans RepID=E8TT77_ALIDB
outer membrane chaperone Skp
Outer membrane chaperone Skp {ECO:0000313|EMBL:GAO27364.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
cn_combo_scaffold_1450_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10543..12801)
DNA (2259bp) protein (753aa)
Outer membrane protein assembly factor BamA n=2 Tax=Alicycliphilus denitrificans RepID=E8TT76_ALIDB
outer membrane protein assembly complex, yaet protein
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
cn_combo_scaffold_1450_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12884..14248)
DNA (1365bp) protein (455aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
Site-2 protease n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W911_ACISJ
peptidase RseP
cn_combo_scaffold_1450_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14347..15522)
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TT74_ALIDB
cn_combo_scaffold_1450_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15519..16361)
DNA (843bp) protein (281aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria;
Phosphatidate cytidylyltransferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MGM2_ACIET
phosphatidate cytidylyltransferase
cn_combo_scaffold_1450_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16355..17101)
DNA (747bp) protein (249aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=12551928 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
UDP diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
cn_combo_scaffold_1450_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17152..17712)
DNA (561bp) protein (187aa)
ribosome recycling factor n=1 Tax=Comamonas testosteroni RepID=UPI000309B5BC
ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=285 species="Bacteria; Pro
cn_combo_scaffold_1450_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17749..18468)
DNA (720bp) protein (240aa)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] id=12551926 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
uridylate kinase
cn_combo_scaffold_1450_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18513..19409)
DNA (897bp) protein (299aa)
Elongation factor Ts n=2 Tax=Alicycliphilus denitrificans RepID=E8TT69_ALIDB
translation elongation factor ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacter
cn_combo_scaffold_1450_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19496..20251)
DNA (756bp) protein (252aa)
30S ribosomal protein S2 n=2 Tax=Alicycliphilus denitrificans RepID=E8TT68_ALIDB
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilu
cn_combo_scaffold_1450_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20480..20911
DNA (432bp) protein (144aa)
RNA-binding S4 domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TY67_ALIDB
RNA-binding S4 domain-containing protein {ECO:0000313|EMBL:GAO23693.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="
RNA-binding s4 domain-containing protein
cn_combo_scaffold_1450_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21032..22225
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003685823
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDM25688.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Caste
cn_combo_scaffold_1450_25
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22301..23167)
DNA (867bp) protein (289aa)
Alpha/beta hydrolase fold protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W6G3_ACISJ
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABM41838.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax s
cn_combo_scaffold_1450_26
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23164..24243)
DNA (1080bp) protein (360aa)
Inner-membrane translocator n=1 Tax=Acidovorax sp. KKS102 RepID=K0ICC9_9BURK
inner-membrane translocator Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
inner-membrane translocator
cn_combo_scaffold_1450_27
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24256..25239)
DNA (984bp) protein (328aa)
ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI0002376620
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJE51283.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
inner-membrane translocator
cn_combo_scaffold_1450_28
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25310..26035)
DNA (726bp) protein (242aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J1EGA4_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJE51284.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
ABC transporter
cn_combo_scaffold_1450_29
unknown

Not on your lists

comp(26032..26178)
DNA (147bp) protein (49aa)

This feature has no annotations

cn_combo_scaffold_1450_30
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26175..26945)
DNA (771bp) protein (257aa)
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJA09384.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; A
ABC transporter-like protein id=12549698 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter
Displaying items 1-30 of 61 in total

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