ggKbase home page

cn_combo_scaffold_132

Alias: BURK59_25

Search features with annotation key words

Displaying items 1-30 of 585 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_132_1
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)
Elongation factor Tu (Fragment) n=6 Tax=Achromobacter RepID=J4Y5J4_9BURK
Translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacter
cn_combo_scaffold_132_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(267..2375)
DNA (2109bp) protein (703aa)
Elongation factor G n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH4_ALIDB
translation elongation factor g
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
cn_combo_scaffold_132_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2463..2936)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F7CDC
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. M
30S ribosomal protein S7
cn_combo_scaffold_132_4
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3095..3472)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=2 Tax=Delftia RepID=RS12_DELAS
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delfti
cn_combo_scaffold_132_5
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3710..5464
DNA (1755bp) protein (585aa)
hydroxylamine oxidoreductase (EC:1.7.3.4)
Hydroxylamine oxidoreductase {ECO:0000313|EMBL:AAV97335.1}; EC=1.7.2.6 {ECO:0000313|EMBL:AAV97335.1};; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacter
Hydroxylamine oxidoreductase n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LL28_RUEPO
8 heme binding motifs, likely haoA Rose Kantor (10/8/14)
cn_combo_scaffold_132_6
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5550..6578
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GL05_NITSI
hypothetical protein Tax=CG_Rhodocyc_01
hypothetical protein
Probably HaoB. Rose Kantor (10/8/14)
cn_combo_scaffold_132_7
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6583..7395
DNA (813bp) protein (271aa)
Heme exporter subunit membrane component of ABC superfamily protein C n=5 Tax=Proteobacteria RepID=Q1LKR2_RALME
heme exporter protein CcmC; K02195 heme exporter protein C Tax=CG_Rhodocyc_01
ccmC; heme exporter membrane protein C
cn_combo_scaffold_132_8
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7395..7532
DNA (138bp) protein (46aa)
Heme exporter protein CcmD n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7Y2_9PROT
heme exporter protein CcmD; K02196 heme exporter protein D Tax=CG_Rhodof_03
heme exporter protein CcmD
cn_combo_scaffold_132_9
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7536..7997
DNA (462bp) protein (154aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEY0_NITSI
CcmE/CycJ protein; K02197 cytochrome c-type biogenesis protein CcmE Tax=RBG_16_Betaproteobacteria_66_20_curated
Cytochrome c-type biogenesis protein ccmE
cn_combo_scaffold_132_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7994..10009
DNA (2016bp) protein (672aa)
Cytochrome c-type biogenesis protein (CcmF) n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82WC4_NITEU
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
ccmF; cytochrome c-type biogenesis protein (CcmF)
cn_combo_scaffold_132_11
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10006..10533
DNA (528bp) protein (176aa)
Periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK54_9BURK
periplasmic protein thiol--disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
periplasmic protein thiol--disulfide oxidoreductase DsbE
cn_combo_scaffold_132_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10526..11002
DNA (477bp) protein (159aa)
Cytochrome c-type biogenesis protein CcmH n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRB7_RUBGI
ccmH; cytochrome c-type biogenesis protein CcmH
Cytochrome c-type biogenesis protein CcmH {ECO:0000313|EMBL:BAL95554.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinos
cn_combo_scaffold_132_13
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10999..12231
DNA (1233bp) protein (411aa)
Cytochrome c-type biogenesis protein CcmI n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CST3_SIDLE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Cytochrome C-type biogenesis protein CcmI
cn_combo_scaffold_132_14
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12239..12892
DNA (654bp) protein (218aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; Ta
Cytochrome c biogenesis ATP-binding export protein CcmA n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=CCMA_DECAR
cytochrome c biogenesis protein CcmA
cn_combo_scaffold_132_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12889..13605
DNA (717bp) protein (239aa)
Heme exporter protein B n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKW5_AZOSU
heme exporter protein CcmB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain
cn_combo_scaffold_132_16
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13623..15122)
DNA (1500bp) protein (500aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KBV0_NITWC
GntR family transcriptional regulator
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:ADJ27711.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nit
cn_combo_scaffold_132_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15244..16407)
DNA (1164bp) protein (388aa)
beta-lactamase (EC:3.5.2.6)
Beta-lactamase {ECO:0000313|EMBL:ADU98181.1}; EC=3.5.2.6 {ECO:0000313|EMBL:ADU98181.1};; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
Beta-lactamase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH1_ALIDB
cn_combo_scaffold_132_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16484..16981)
DNA (498bp) protein (166aa)
alpha/beta hydrolase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003602C6F
Predicted hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:GAD21126.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sou
hypothetical protein
cn_combo_scaffold_132_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17173..17514)
DNA (342bp) protein (114aa)
Putative ferredoxin n=1 Tax=Variovorax paradoxus B4 RepID=T1XIL5_VARPD
putative ferredoxin
Ferredoxin {ECO:0000313|EMBL:KGH27490.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas tes
cn_combo_scaffold_132_20
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17538..17966)
DNA (429bp) protein (143aa)
Uncharacterized protein id=1287061 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Putative membrane protein {ECO:0000313|EMBL:EWS66006.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga
hypothetical protein
cn_combo_scaffold_132_trna_3
unknown

Not on your lists

comp(18026..18099)
DNA (74bp)
transferRNA
cn_combo_scaffold_132_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18135..20456)
DNA (2322bp) protein (774aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000373B748
Uncharacterized protein {ECO:0000313|EMBL:GAD23414.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
cn_combo_scaffold_132_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20515..21468)
DNA (954bp) protein (318aa)
Protein-export membrane protein SecF n=2 Tax=Alicycliphilus denitrificans RepID=E8TX29_ALIDB
protein-export membrane protein secf
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="A
cn_combo_scaffold_132_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21489..23390)
DNA (1902bp) protein (634aa)
Protein translocase subunit SecD n=2 Tax=Alicycliphilus denitrificans RepID=E8TX30_ALIDB
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
protein-export membrane protein secd
cn_combo_scaffold_132_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23450..23785)
DNA (336bp) protein (112aa)
Preprotein translocase, YajC subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8N6_ACIDE
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EER59160.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
preprotein translocase subunit YajC
cn_combo_scaffold_132_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23950..27564)
DNA (3615bp) protein (1205aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
MFS transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000376978C
Pyruvate/ketoisovalerate oxidoreductase {ECO:0000313|EMBL:GAD22205.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
cn_combo_scaffold_132_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27633..28376)
DNA (744bp) protein (248aa)
nucleotidyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036484A6
Nucleoside-diphosphate-sugar pyrophosphorylase {ECO:0000313|EMBL:GAD23350.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source
nucleotidyl transferase
cn_combo_scaffold_132_27
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28452..29834
DNA (1383bp) protein (461aa)
Peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHM6_ACIET
peptidase m24b x-pro dipeptidase/aminopeptidase domain-containing protein
Peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein {ECO:0000313|EMBL:ACM34735.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acido
cn_combo_scaffold_132_28
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29953..30309
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037665CF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG10220.1}; Flags: Precursor;; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" so
cn_combo_scaffold_132_29
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30368..31213
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003813D68
FTR1 family iron permease {ECO:0000313|EMBL:KJH69051.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium v
iron permease FTR1
Displaying items 1-30 of 585 in total

View Taxonomy