ggKbase home page

cn_combo_scaffold_1577_5

Organism: CN-SCN_Cytophagaceae_12x

partial RP 39 / 55 BSCG 38 / 51 ASCG 12 / 38
Location: comp(6625..10065)

Top 3 Functional Annotations

Value Algorithm Source
TonB-dependent receptor n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V5T8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 57.0
  • Coverage: 999.99
  • Bit_score: 1313
  • Evalue 0.0
TonB-dependent receptor {ECO:0000313|EMBL:EPR65545.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12- similarity UNIPROT
DB: UniProtKB
  • Identity: 57.0
  • Coverage: 999.99
  • Bit_score: 1313
  • Evalue 0.0
putative outer membrane protein similarity KEGG
DB: KEGG
  • Identity: 45.0
  • Coverage: 999.99
  • Bit_score: 894
  • Evalue 2.30e-257

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Cyclobacterium qasimii → Cyclobacterium → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 3441
ATGAAAAAAAGTATACCGCTACAACGGTTTATCCTGAGGTCTATGCAACTAACTCTAACCCAGCTTCTCATAGCCTCGCTTTTCTGCGGTATTTCGCTGGCGCATACGCTTCGGGGCCAGGAAATCCTGAGCAGGGAGATCTCTTTACAGGTGGAGTCCGTAGAAGTGAGCAAGATCCTGAACCAGTTGGAGAAGCAGGCCAGGGTGAAGTTTATCTATAGCACGCATAGCATACAGCTGCGGCAAAAGGCGTCGCTGAACGTGCATAACCGTCCTCTTTTCAGCGTGCTTGACGAGCTGTTCAGTCCAATGCAGGTGCAGTATGAGGTGTTGGGTTCCCGCATACTGCTCAGAAAGAAAATGGTTGAGAAGCAGAGTTCCGCGCTGAGAATAACTTTTCCCGACCGGAATGTAAGAGGGGTGGTGACGGATGAGAAAGGAGAGGGGCTGCCCGGCGTGAGCATTCTCCTGAAAGGCTCCCAGCAAGGTACTACAACCGATGGCTCGGGACAATACAGCATGTCTGTCGCCGGAAGCGAGAGCATTCTCATATTCAGCTTTGTCGGCTATGTAAGCCAGGAGATTGTAGTAGGAAACAGCTCTACTATAGACGTATCGCTGGTGGCTGATACGAAGGCGTTGGAAGAGCTGGTAGTAGTGGGATACGGCACGCAGAAAAAAGTCAACCTGACAGGCGCAGTAGCCTCTGTCGGGGCAGAAGTACTGGAAAGCCGCCCGGTAGCCAATCTGGGCCAGGCGCTCCAGGGCAATATTGCCAACCTGAATATTTCGCAGGCGAGCGGTGCGCTCGGCAAAGGAAGTAATTTCAACATACGGGGCAATACCTCTATCAATGGCGGGAGCCCGCTGGTATTGGTGAACGGAATCCCAATGGATATCAATATTCTGAATCCTAACGATATAGAGAGTGTGGTGGTGCTGAAAGACGCCGCTTCAGCCGCTATTTACGGAGCCAGGGCCGCCTATGGAGTCATACTGGTTACGACTAAGAGCGGGAAAAAAGACCTGAAGCCGAATATTTCCTTTACGACCAACTTCTCGACCAATACACCGGTTGTGAAGTTCGAGACGATGGATGCGCTGGAGCGCATGAGGTATATGAACGAGGCCAACATCCGTATCAATGGGAGGCCTTACTACCAGTTCGACGAATATTATGAAAAGGCGATCCTGGCGCATTATTACGATCCTTCGCAGCCCGAAACATTCCAGCACCCCAACGAATCGCCGACCCAGTATGCTTTTTCCGCCAATACCGACTGGGCTGATGTCCTGCTGAGAAACAGCTACCCGCAGCAGCAGCATACCGTTGGCATTTCGGGTGGGTCTGAGCGCTTCGACTATTATACTTCCCTGTCCTATTTCAACGCAAAGGGGATCACCAAGAACTTTAACGAGCGCTACAACCGCTACAACGTTATGTCGAACCTGAACTACGACCTGGCAAAATGGATAAAGGTAGGGACCAAGATATCGATCAACGCAAGTAACAAGGTTTACCCGCCCAACGACGCAAGCGACAACTTCAATGAAGACCGCAATATGTTCCAGGTACACCAATGGCCCAACTGGCCTGTCTACCTTCCCGACGGGAACTATGCCTCGTTGGGCTCGGTACCCAATGTCCTGCAGATGCATAAGGAAGGAGGGTATCGTACCCGCGATATTTTTGATTCCTGGCTGACCGGGCTCGTTAAGCTTACTCCCGTAAAGAACATGACGGTCAACATGGACTACTCCTTTAACATCCAGGACACCGAAGAGCTGGACTACCGTAAAAGGCTGCCGATGTACGATCGCACCGGGATCAGCGGATATTATCCGTATACAAACCCAAGCTCTGTGACGAGGAACAACTACAATAACCGCTACCAGGTTTTCAATGCTTATGCAGATTATGAAAACACACTGGGCAAGCACTACTTTAAGGTAATGGCAGGCTTCAACCAGGAAAGCGCCCGCTATCGTTTCTTCCAAGCCAAAAGAGAGAAGCTGATCGTGGAATCGATGCCTTTTATGGACCTGTCGTATGGCGAACGCTATACCAGTGATTCGGAATCGGAATATGCGATCCGGGGGGTATTCTCAAGGGTAAATTACAGCTTCGATGACCGCTATTTCCTTGAATTCAACGGTCGCTACGACGGCAGCTCCAAATTCCCGAAAAGCGACCGGTTCGCCTTCTTTCCTTCCCTTTCTCTCGGCTGGAGAATCGACAACGAGGGCTTCTTCAGCACGCTGCGCGACAAAATCAGCATGCTGAAGCTGCGGGCTTCGTACGGGAACCTGGGCAATCAGAACGTAACGGGCTACTATCCCTATGTTGCCACTTACACTTCCGGTCTGGCCGGGTACCTGATCAACAGCGACAACCCGATGGCCGTGTATGCCCCCGGCCTGGTGAGCCCGACCCTTACCTGGGAGACGGTAACCCAGCAGGATCTCGGGATCGACTTCGGGCTGTTCGGGAACCAGCTGACAGGCTCGTTCGACCTCTACAGGAGAGATACCAAAAATATGCTGACCCGCTCACAGACGCTGCCTGCCACCCTGGCGGTCAGCGAGCCCCAGGCCAACGCCGCCGATATGAAGACGGTCGGGTTTGATATGACCGTCGGGTGGAATAAAAGCTCCGGGAATTTTAAATACGGCGTGTCGCTGATACTTTCCGATTATCGCGCGACTATCACCAGGTACAGCAATCCTTCGGGGCTGATCTCCGACTACTACGTCGGGCAGAAGGTAGGAAGCATCTGGGGGCTGGTTACGGGTGGGCTCTTCCAGTCGGATGAGGAGGCTGCCGCGCTTGACCAATCCCAGATCAACGGCCGCAAAAGGGTAGCAGGAGACCTTTATTTTGTCGACCTCGACGGCGATGGCAAAATTACCCGCGGCACCCAGACCTTGTCCAATCACGGCGATATGAGCATCATCGGTAACAACACGCCGAGGTACAGCTACGGGCTGCGCTCCAATGTCTCATGGAAAGGATTTGATCTCGATGTCCTGTTCCAGGGAGTGGCCAGACGCGACCTCGTCATAGCCGGCAACTATTTCGTAAACCAATATAACGATGAATGGGGAGTGCAGGGTAAAATCGGTACCGACTGGTGGTCGGAAACCAACCGCGACGCCTATTTTCCGCGGCCGCTTATTACAGGCGGAACGGATGTTACCACGCCGCAGACCCGCTACATGCAGAATGCAGCCTACCTGCGCCTGAAGCAGCTTACGCTCGCCTATACCATCCCGACAGCCGTAGCACAAAAGATAGGGTCTAAGCGGATCCAGGTCTATTTCTCCGGCAACAACATGTGGGAGGCAACCAAGATGGTCCATATAGTAGATCCGGAGCAATCGAGCGCGATGTCATATCCCCTGAACAGGGCCTATTCGATTGGAGCTAATATCGGTTTTTAA
PROTEIN sequence
Length: 1147
MKKSIPLQRFILRSMQLTLTQLLIASLFCGISLAHTLRGQEILSREISLQVESVEVSKILNQLEKQARVKFIYSTHSIQLRQKASLNVHNRPLFSVLDELFSPMQVQYEVLGSRILLRKKMVEKQSSALRITFPDRNVRGVVTDEKGEGLPGVSILLKGSQQGTTTDGSGQYSMSVAGSESILIFSFVGYVSQEIVVGNSSTIDVSLVADTKALEELVVVGYGTQKKVNLTGAVASVGAEVLESRPVANLGQALQGNIANLNISQASGALGKGSNFNIRGNTSINGGSPLVLVNGIPMDINILNPNDIESVVVLKDAASAAIYGARAAYGVILVTTKSGKKDLKPNISFTTNFSTNTPVVKFETMDALERMRYMNEANIRINGRPYYQFDEYYEKAILAHYYDPSQPETFQHPNESPTQYAFSANTDWADVLLRNSYPQQQHTVGISGGSERFDYYTSLSYFNAKGITKNFNERYNRYNVMSNLNYDLAKWIKVGTKISINASNKVYPPNDASDNFNEDRNMFQVHQWPNWPVYLPDGNYASLGSVPNVLQMHKEGGYRTRDIFDSWLTGLVKLTPVKNMTVNMDYSFNIQDTEELDYRKRLPMYDRTGISGYYPYTNPSSVTRNNYNNRYQVFNAYADYENTLGKHYFKVMAGFNQESARYRFFQAKREKLIVESMPFMDLSYGERYTSDSESEYAIRGVFSRVNYSFDDRYFLEFNGRYDGSSKFPKSDRFAFFPSLSLGWRIDNEGFFSTLRDKISMLKLRASYGNLGNQNVTGYYPYVATYTSGLAGYLINSDNPMAVYAPGLVSPTLTWETVTQQDLGIDFGLFGNQLTGSFDLYRRDTKNMLTRSQTLPATLAVSEPQANAADMKTVGFDMTVGWNKSSGNFKYGVSLILSDYRATITRYSNPSGLISDYYVGQKVGSIWGLVTGGLFQSDEEAAALDQSQINGRKRVAGDLYFVDLDGDGKITRGTQTLSNHGDMSIIGNNTPRYSYGLRSNVSWKGFDLDVLFQGVARRDLVIAGNYFVNQYNDEWGVQGKIGTDWWSETNRDAYFPRPLITGGTDVTTPQTRYMQNAAYLRLKQLTLAYTIPTAVAQKIGSKRIQVYFSGNNMWEATKMVHIVDPEQSSAMSYPLNRAYSIGANIGF*