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CN-SCN_Cytophagaceae_12x

CN-SCN_Cytophagales_52_12
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Cytophagales  →  Cytophagia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 12.29 Longest contig: 117.39 Kbp Bin length: 5.12 Mbp GC content: 52.16 %
Contigs count: 274 Features count: 4262 rRNAs count: 0 tRNAs count: 23

Genome completeness

partial RP 39 / 55 BSCG 38 / 51 ASCG 12 / 38

Description

Partial 37

Displaying items 1-50 of 274 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_244 CYT12_1
Species: Dyadobacter fermentans (62.16%)
111 117394 bp 51.91 12.90 91.43
cn_combo_scaffold_834 CYT12_5
Order: Cytophagales (66.13%)
62 86604 bp 52.49 13.66 92.82
cn_combo_scaffold_387 CYT12_2
Order: Cytophagales (51.72%)
58 92006 bp 53.13 14.07 92.16
cn_combo_scaffold_2433 CYT12_218
Phylum: Bacteroidetes (70.37%)
54 58015 bp 50.93 11.96 88.37
cn_combo_scaffold_730 CYT12_3
Species: Dyadobacter fermentans (62.5%)
48 60383 bp 52.19 12.47 90.89
cn_combo_scaffold_1842 CYT12_36
Species: Dyadobacter fermentans (56.25%)
48 52937 bp 52.17 12.33 91.59
cn_combo_scaffold_985 CYT12_9
Species: Dyadobacter fermentans (61.7%)
47 59599 bp 51.35 12.30 86.85
cn_combo_scaffold_901 CYT12_6
Phylum: Bacteroidetes (91.11%)
45 52818 bp 52.15 11.66 91.96
cn_combo_scaffold_947 CYT12_8
Species: Dyadobacter fermentans (61.36%)
44 51022 bp 52.13 12.07 90.72
cn_combo_scaffold_1005 CYT12_10
Order: Cytophagales (83.72%)
43 47913 bp 52.76 11.31 91.31
cn_combo_scaffold_795 CYT12_4
Order: Cytophagales (64.29%)
42 67945 bp 53.44 13.01 92.35
cn_combo_scaffold_918 CYT12_7
Order: Cytophagales (52.5%)
40 52171 bp 52.83 13.04 92.77
cn_combo_scaffold_2132 CYT12_45
Species: Dyadobacter fermentans (55%)
40 46089 bp 52.40 12.84 89.43
cn_combo_scaffold_1218 CYT12_211
Phylum: Bacteroidetes (87.18%)
39 41027 bp 52.26 12.12 90.83
cn_combo_scaffold_1039 CYT12_11
Species: Dyadobacter fermentans (50%)
38 46617 bp 51.44 11.52 90.98
cn_combo_scaffold_1089 CYT12_12
Species: Dyadobacter fermentans (58.33%)
36 45015 bp 52.50 12.87 89.82
cn_combo_scaffold_1933 CYT12_39
Order: Cytophagales (69.44%)
36 47651 bp 52.12 11.99 93.06
cn_combo_scaffold_1481 CYT12_20
Species: Dyadobacter fermentans (54.29%)
35 39628 bp 51.40 13.21 88.89
cn_combo_scaffold_1577 CYT12_24
Order: Cytophagales (71.43%)
35 48170 bp 52.74 13.92 92.14
cn_combo_scaffold_4108 CYT12_112
Order: Cytophagales (75.76%)
33 36683 bp 52.73 13.19 88.32
cn_combo_scaffold_1840 CYT12_34
Species: Dyadobacter fermentans (68.75%)
32 29438 bp 51.75 11.73 90.12
cn_combo_scaffold_1098 CYT12_13
Order: Cytophagales (61.29%)
31 44580 bp 51.94 13.66 92.22
cn_combo_scaffold_1461 CYT12_19
Order: Cytophagales (64.52%)
31 35295 bp 51.97 11.08 91.79
cn_combo_scaffold_1880 CYT12_37
Species: Dyadobacter fermentans (74.19%)
31 28802 bp 51.28 11.85 88.83
cn_combo_scaffold_1437 CYT12_17
Phylum: Bacteroidetes (86.67%)
30 35830 bp 54.48 15.21 95.79
cn_combo_scaffold_1457 CYT12_18
Species: Dyadobacter fermentans (73.33%)
30 35369 bp 51.65 12.19 91.22
cn_combo_scaffold_2014 CYT12_41
Order: Cytophagales (66.67%)
30 27103 bp 51.82 11.76 87.26
cn_combo_scaffold_1184 CYT12_14
Order: Cytophagales (58.62%)
29 41803 bp 52.62 12.70 93.78
cn_combo_scaffold_1363 CYT12_16
Order: Cytophagales (62.07%)
29 37653 bp 52.04 11.65 92.45
cn_combo_scaffold_1944 CYT12_38
Species: Dyadobacter fermentans (82.76%)
29 27989 bp 51.98 12.37 90.35
cn_combo_scaffold_1342 CYT12_15
Order: Cytophagales (82.14%)
28 38155 bp 53.04 13.41 94.13
cn_combo_scaffold_1596 CYT12_25
Order: Cytophagales (53.57%)
28 32626 bp 52.57 12.35 91.59
cn_combo_scaffold_1836 CYT12_33
Species: Dyadobacter fermentans (57.14%)
28 29468 bp 52.69 12.61 93.43
cn_combo_scaffold_2481 CYT12_53
Species: Dyadobacter fermentans (60.71%)
28 32287 bp 51.69 11.03 89.01
cn_combo_scaffold_1569 CYT12_23
Species: Dyadobacter fermentans (59.26%)
27 35217 bp 53.26 12.05 87.84
cn_combo_scaffold_2246 CYT12_255
Order: Sphingobacteriales (57.69%)
26 38799 bp 54.30 13.09 90.78
cn_combo_scaffold_1713 CYT12_28
Species: Dyadobacter fermentans (50%)
26 31102 bp 52.50 11.93 89.99
cn_combo_scaffold_2142 CYT12_44
Species: Dyadobacter fermentans (50%)
26 25559 bp 50.65 11.96 90.27
cn_combo_scaffold_1781 CYT12_213
Phylum: Bacteroidetes (50%)
26 30076 bp 54.51 13.24 93.59
cn_combo_scaffold_1770 CYT12_32
Species: Dyadobacter fermentans (60%)
25 30270 bp 52.11 12.50 89.85
cn_combo_scaffold_2262 CYT12_46
Species: Dyadobacter fermentans (64%)
25 24141 bp 51.57 12.19 89.71
cn_combo_scaffold_2899 CYT12_66
Species: Dyadobacter fermentans (56%)
25 27367 bp 52.94 11.98 94.41
cn_combo_scaffold_1474 CYT12_212
Phylum: Bacteroidetes (68%)
25 34913 bp 52.04 13.82 93.54
cn_combo_scaffold_1512 CYT12_21
Order: Cytophagales (54.17%)
24 34061 bp 53.70 13.78 95.97
cn_combo_scaffold_1720 CYT12_30
Phylum: Bacteroidetes (79.17%)
24 30937 bp 52.79 12.01 90.76
cn_combo_scaffold_3013 CYT12_73
Order: Cytophagales (70.83%)
24 34947 bp 52.55 12.47 91.29
cn_combo_scaffold_1693 CYT12_27
Species: Dyadobacter fermentans (60.87%)
23 31358 bp 51.03 12.19 90.40
cn_combo_scaffold_3533 CYT12_90
Order: Cytophagales (60.87%)
23 16247 bp 50.99 21.92 86.31
cn_combo_scaffold_2381 CYT12_256
Phylum: Bacteroidetes (90.91%)
22 28212 bp 52.40 13.23 93.93
cn_combo_scaffold_2500 CYT12_55
Order: Cytophagales (81.82%)
22 22073 bp 52.72 11.74 93.28
Displaying items 1-50 of 274 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.