ggKbase home page

cn_combo_scaffold_1457

Alias: CYT12_18

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1457_1
unknown

Not on your lists

comp(2..994)
-----------------
DNA (993bp)
protein (331aa)

This feature has no annotations

cn_combo_scaffold_1457_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1136..2629)
-----------------
DNA (1494bp)
protein (498aa)
ABC transporter n=1 Tax=Dyadobacter beijingensis RepID=UPI000365FF6B
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACT94186.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1457_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2746..3687)
-----------------
DNA (942bp)
protein (314aa)
pyruvate dehydrogenase subunit beta n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C5F9C
transketolase
Transketolase central region {ECO:0000313|EMBL:ACT94718.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strai
cn_combo_scaffold_1457_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3864..6188)
-----------------
DNA (2325bp)
protein (775aa)
glycosyl transferase n=1 Tax=Dyadobacter beijingensis RepID=UPI00036C5473
penicillin-binding protein 1C
Penicillin-binding protein 1C {ECO:0000313|EMBL:ACT95107.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobact
cn_combo_scaffold_1457_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6233..6988)
-----------------
DNA (756bp)
protein (252aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZX4_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95301.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1457_6
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7076..8386)
-----------------
DNA (1311bp)
protein (437aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GQZ9_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:CCH56327.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.
DEAD/DEAH box helicase
cn_combo_scaffold_1457_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8531..11494
-----------------
DNA (2964bp)
protein (988aa)
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:ACT94292.1}; EC=1.1.2.4 {ECO:0000313|EMBL:ACT94292.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; D
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6F2_DYAFD
D-lactate dehydrogenase
cn_combo_scaffold_1457_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11534..11779)
-----------------
DNA (246bp)
protein (82aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW59_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93191.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1457_9
unknown

Not on your lists

12230..12436
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

cn_combo_scaffold_1457_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12572..13357)
-----------------
DNA (786bp)
protein (262aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003683E94
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95536.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1457_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13361..13804)
-----------------
DNA (444bp)
protein (148aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003668B4A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95537.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1457_12
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13933..14514)
-----------------
DNA (582bp)
protein (194aa)
LemA family protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W1W3_DYAFD
LemA family protein
LemA family protein {ECO:0000313|EMBL:ACT95538.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 70
cn_combo_scaffold_1457_13
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14572..15723)
-----------------
DNA (1152bp)
protein (384aa)
Cryptochrome, DASH family {ECO:0000313|EMBL:CCH51396.1}; EC=4.1.99.3 {ECO:0000313|EMBL:CCH51396.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.
Cryptochrome, DASH family n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GBX2_9BACT
deoxyribodipyrimidine photo-lyase
cn_combo_scaffold_1457_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15767..17458)
-----------------
DNA (1692bp)
protein (564aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:ACT95125.1}; EC=3.4.21.102 {ECO:0000313|EMBL:ACT95125.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobac
Carboxyl-terminal protease n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXU2_DYAFD
carboxyl-terminal protease
cn_combo_scaffold_1457_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17517..19433)
-----------------
DNA (1917bp)
protein (639aa)
acetoacetyl-CoA synthetase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003781E1D
acetoacetyl-CoA synthase
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:ACT95124.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain AT
cn_combo_scaffold_1457_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19615..21237
-----------------
DNA (1623bp)
protein (541aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacte
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00035FDE20
pseudouridine synthase
cn_combo_scaffold_1457_17
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21258..22466)
-----------------
DNA (1209bp)
protein (403aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae
tryptophan synthase subunit beta n=1 Tax=Dyadobacter beijingensis RepID=UPI00036E0A1A
tryptophan synthase subunit beta
cn_combo_scaffold_1457_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22537..23157)
-----------------
DNA (621bp)
protein (207aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5''''-phosphoribosyl)anthranilate isomerase n=1 Tax=Dyadobacter beijingensis RepID=UPI000375B326
phosphoribosylanthranilate isomerase
cn_combo_scaffold_1457_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23288..24103)
-----------------
DNA (816bp)
protein (272aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
Indole-3-glycerol phosphate synthase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWG6_DYAFD
Indole-3-glycerol phosphate synthase
cn_combo_scaffold_1457_20
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24152..24856)
-----------------
DNA (705bp)
protein (235aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6AUA2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB46530.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HG
phospholipase/carboxylesterase
cn_combo_scaffold_1457_21
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24899..25891)
-----------------
DNA (993bp)
protein (331aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1185876 sp
Anthranilate phosphoribosyltransferase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GRZ0_9BACT
anthranilate phosphoribosyltransferase
cn_combo_scaffold_1457_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25907..26473)
-----------------
DNA (567bp)
protein (189aa)
anthranilate synthase subunit II n=1 Tax=Dyadobacter beijingensis RepID=UPI000367C2F6
glutamine amidotransferase of anthranilate synthase
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:ACT94995.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadob
cn_combo_scaffold_1457_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26541..27950)
-----------------
DNA (1410bp)
protein (470aa)
Anthranilate synthase {ECO:0000313|EMBL:ACT94994.1}; EC=4.1.3.27 {ECO:0000313|EMBL:ACT94994.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;"
Anthranilate synthase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWG3_DYAFD
anthranilate synthase
cn_combo_scaffold_1457_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28268..28912
-----------------
DNA (645bp)
protein (215aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
endonuclease III n=1 Tax=Dyadobacter beijingensis RepID=UPI000366112C
endonuclease III
cn_combo_scaffold_1457_25
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29009..29893
-----------------
DNA (885bp)
protein (295aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophag
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VV10_DYAFD
FKBP-type peptidylprolyl isomerase
cn_combo_scaffold_1457_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29972..31207)
-----------------
DNA (1236bp)
protein (412aa)
Metallophosphoesterase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W5R4_DYAFD
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACT96003.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC
cn_combo_scaffold_1457_27
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(31242..31958)
-----------------
DNA (717bp)
protein (239aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EGR1_RUNSL
hemerythrin HHE cation binding domain-containing protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:AEI47001.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyfo
cn_combo_scaffold_1457_28
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(32074..33579)
-----------------
DNA (1506bp)
protein (502aa)
amidinotransferase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C58FA
amidinotransferase
Amidinotransferase {ECO:0000313|EMBL:AKD56882.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
cn_combo_scaffold_1457_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33730..34488
-----------------
DNA (759bp)
protein (253aa)
FeS assembly ATPase SufC n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VY65_DYAFD
FeS assembly ATPase SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:ACT96966.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain AT
cn_combo_scaffold_1457_30
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

34607..35368
-----------------
DNA (762bp)
protein (254aa)
FeS assembly protein SufD n=1 Tax=Dyadobacter beijingensis RepID=UPI000371E547
FeS assembly protein SufD
FeS assembly protein SufD {ECO:0000313|EMBL:ACT96967.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain A
Displaying 30 items

View Taxonomy