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cn_combo_scaffold_1039

Alias: CYT12_11

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1039_1
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3..1775
-----------------
DNA (1773bp)
protein (591aa)
PKD domain containing protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GGG8_9BACT
PKD domain containing protein {ECO:0000313|EMBL:CCH52993.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
PKD domain-containing protein
cn_combo_scaffold_1039_2
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1777..2775
-----------------
DNA (999bp)
protein (333aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GGG9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52994.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
cn_combo_scaffold_1039_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2793..3698)
-----------------
DNA (906bp)
protein (302aa)
Aldo/keto reductase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZY2_DYAFD
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACT95309.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 70
cn_combo_scaffold_1039_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3730..5517)
-----------------
DNA (1788bp)
protein (596aa)
Glucose/sorbosone dehydrogenase-like protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W057_DYAFD
Glucose/sorbosone dehydrogenase-like protein
Glucose/sorbosone dehydrogenase-like protein {ECO:0000313|EMBL:ACT95384.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" so
cn_combo_scaffold_1039_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5650..7263
-----------------
DNA (1614bp)
protein (538aa)
Propionyl-CoA carboxylase {ECO:0000313|EMBL:ACT94842.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ACT94842.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.
Propionyl-CoA carboxylase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VV19_DYAFD
propionyl-CoA carboxylase
cn_combo_scaffold_1039_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7334..9235
-----------------
DNA (1902bp)
protein (634aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037D88DE
putative O-antigen-like protein
Putative O-antigen related protein {ECO:0000313|EMBL:ACT94725.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyad
cn_combo_scaffold_1039_7
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9232..9891)
-----------------
DNA (660bp)
protein (220aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EEJ3_RUNSL
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
cn_combo_scaffold_1039_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10010..10981)
-----------------
DNA (972bp)
protein (324aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VRV1_DYAFD
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
cn_combo_scaffold_1039_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11419..12729
-----------------
DNA (1311bp)
protein (437aa)
Glycine C-acetyltransferase {ECO:0000313|EMBL:ACT94470.1}; EC=2.3.1.29 {ECO:0000313|EMBL:ACT94470.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobact
8-amino-7-oxononanoate synthase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037F597C
glycine C-acetyltransferase
cn_combo_scaffold_1039_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13241..13660)
-----------------
DNA (420bp)
protein (140aa)
MaoC domain protein dehydratase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QQA7_SPILD
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADB39540.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain A
cn_combo_scaffold_1039_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13671..15161)
-----------------
DNA (1491bp)
protein (497aa)
Amino acid/peptide transporter {ECO:0000313|EMBL:ACT95534.1}; EC=3.1.3.1 {ECO:0000313|EMBL:ACT95534.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadoba
Amino acid/peptide transporter n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W1V9_DYAFD
amino acid/peptide transporter
cn_combo_scaffold_1039_12
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15355..15879
-----------------
DNA (525bp)
protein (175aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZ35_DYAFD
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:ACT95241.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyado
cn_combo_scaffold_1039_13
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15876..16181
-----------------
DNA (306bp)
protein (102aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit
NADH-quinone oxidoreductase subunit K n=1 Tax=Dyadobacter beijingensis RepID=UPI000366B3B1
NADH-ubiquinone oxidoreductase chain 4L
cn_combo_scaffold_1039_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16237..16803
-----------------
DNA (567bp)
protein (189aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036938DF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95225.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1039_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16823..20446)
-----------------
DNA (3624bp)
protein (1208aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VY48_DYAFD
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ACT96949.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentan
multi-sensor hybrid histidine kinase
cn_combo_scaffold_1039_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


20573..21358
-----------------
DNA (786bp)
protein (262aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase
16S rRNA methyltransferase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003694047
dimethyladenosine transferase
cn_combo_scaffold_1039_17
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21378..22733
-----------------
DNA (1356bp)
protein (452aa)
Magnesium transporter n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VY46_DYAFD
magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strai
cn_combo_scaffold_1039_18
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22730..23182
-----------------
DNA (453bp)
protein (151aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160974}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160970};; TaxID=929562 species="Bacter
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EQR5_EMTOG
D-tyrosyl-tRNA(Tyr) deacylase
cn_combo_scaffold_1039_19
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23183..23506
-----------------
DNA (324bp)
protein (108aa)
pyrophosphatase n=1 Tax=Dyadobacter beijingensis RepID=UPI00036525F1
Uncharacterized protein {ECO:0000313|EMBL:EGK06363.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22
MazG nucleotide pyrophosphohydrolase
cn_combo_scaffold_1039_20
Tamlana sedimentorum, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23667..24263
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MEP0_9SPHI
DNA-binding protein {ECO:0000313|EMBL:KJD31477.1}; TaxID=1435349 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana sedimentorum.;"
hypothetical protein
cn_combo_scaffold_1039_21
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24419..25612
-----------------
DNA (1194bp)
protein (398aa)
Beta-lactamase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VPW7_9SPHI
Beta-lactamase {ECO:0000313|EMBL:KFF17830.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.
beta-lactamase
cn_combo_scaffold_1039_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25602..26189)
-----------------
DNA (588bp)
protein (196aa)
siroheme synthase n=1 Tax=Dyadobacter beijingensis RepID=UPI000375B4E4
siroheme synthase
Siroheme synthase {ECO:0000313|EMBL:ACT95981.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 7008
cn_combo_scaffold_1039_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26186..26911)
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000379A115
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95762.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1039_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27018..27674)
-----------------
DNA (657bp)
protein (219aa)
Protein involved in gliding motility GldD n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W3R3_DYAFD
gliding motility proteinGldD
Protein involved in gliding motility GldD {ECO:0000313|EMBL:ACT95761.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter ferm
cn_combo_scaffold_1039_25
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27722..28321)
-----------------
DNA (600bp)
protein (200aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JNA8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHM59685.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirga
hypothetical protein
cn_combo_scaffold_1039_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28474..30312)
-----------------
DNA (1839bp)
protein (613aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
glutamine amidotransferase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037A78A4
glucosamine--fructose-6-phosphate aminotransferase
cn_combo_scaffold_1039_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


31189..31656
-----------------
DNA (468bp)
protein (156aa)
30S ribosomal protein S7 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W1W7_DYAFD
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strai
cn_combo_scaffold_1039_28
Capnocytophaga granulosa, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31708..31899)
-----------------
DNA (192bp)
protein (64aa)
Uncharacterized protein n=1 Tax=Capnocytophaga granulosa ATCC 51502 RepID=S2VS03_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EPD30243.1}; TaxID=641143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga gran
hypothetical protein
cn_combo_scaffold_1039_29
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32373..32936
-----------------
DNA (564bp)
protein (188aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J8A9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ61149.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobac
cn_combo_scaffold_1039_30
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33079..33792
-----------------
DNA (714bp)
protein (238aa)
GntR family transcriptional regulator n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036BCDF9
transcriptional regulator Tax=GWE2_Bacteroidetes_42_39_curated
transcriptional regulator, GntR family
Displaying items 1-30 of 38 in total

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