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cn_combo_scaffold_1461

Alias: CYT12_19

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1461_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2..1324
-----------------
DNA (1323bp)
protein (441aa)
molecular chaperone ClpB n=1 Tax=Dyadobacter beijingensis RepID=UPI0003602895
ATP-dependent chaperone ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain AT
cn_combo_scaffold_1461_2
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1496..3559
-----------------
DNA (2064bp)
protein (688aa)
Peptidase M3 n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HS88_9SPHI
Peptidase M3 {ECO:0000313|EMBL:ERJ58377.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium pauc
peptidase M3
cn_combo_scaffold_1461_3
Psychroflexus gondwanensis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3620..4090)
-----------------
DNA (471bp)
protein (157aa)
RES superfamily protein n=1 Tax=Psychroflexus gondwanensis ACAM 44 RepID=N1WTX6_9FLAO
RES superfamily protein {ECO:0000313|EMBL:EMY82455.1}; TaxID=1189619 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus gondw
RES superfamily protein
cn_combo_scaffold_1461_4
Psychroflexus gondwanensis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4090..4530)
-----------------
DNA (441bp)
protein (147aa)
Antitoxin of toxin-antitoxin module, putative n=1 Tax=Psychroflexus gondwanensis ACAM 44 RepID=N1WZF8_9FLAO
Antitoxin of toxin-antitoxin module, putative {ECO:0000313|EMBL:EMY82454.1}; TaxID=1189619 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" sourc
antitoxin of toxin-antitoxin module, putative
cn_combo_scaffold_1461_5
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4604..5125)
-----------------
DNA (522bp)
protein (174aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QDH5_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB36405.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 3390
cn_combo_scaffold_1461_6
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5267..6163)
-----------------
DNA (897bp)
protein (299aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RXV3_LEAB4
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADQ19050.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (stra
cn_combo_scaffold_1461_7
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(6456..6830)
-----------------
DNA (375bp)
protein (125aa)
Aminopeptidase n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SS73_9FLAO
Aminopeptidase {ECO:0000313|EMBL:ESU29037.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosedimin
membrane protein
cn_combo_scaffold_1461_8
Ornithobacterium rhinotracheale, Ornithobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7051..8352
-----------------
DNA (1302bp)
protein (434aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / LMG 9086) RepID=I3ZYD8_ORNRL
multidrug transporter
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:AFL96722.1}; TaxID=867902 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Ornithobacterium.;" s
cn_combo_scaffold_1461_9
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8456..10240
-----------------
DNA (1785bp)
protein (595aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S544_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:KHJ38120.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter gluco
hypothetical protein
cn_combo_scaffold_1461_10
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10501..11778
-----------------
DNA (1278bp)
protein (426aa)
oxidoreductase n=1 Tax=Segetibacter koreensis RepID=UPI000368768E
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFK56115.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;"
oxidoreductase domain-containing protein
cn_combo_scaffold_1461_11
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11861..13699
-----------------
DNA (1839bp)
protein (613aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RVZ8_LEAB4
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADQ18908.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterel
cn_combo_scaffold_1461_12
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13702..14568)
-----------------
DNA (867bp)
protein (289aa)
pyrroline-5-carboxylate reductase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037DF66A
pyrroline-5-carboxylate reductase
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925}
cn_combo_scaffold_1461_13
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14613..15761)
-----------------
DNA (1149bp)
protein (383aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000378BF14
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ADB41919.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytop
cn_combo_scaffold_1461_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15767..17245)
-----------------
DNA (1479bp)
protein (493aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VU50_DYAFD
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
cn_combo_scaffold_1461_15
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17463..17732
-----------------
DNA (270bp)
protein (90aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
glutamyl-tRNA amidotransferase subunit C n=1 Tax=Spirosoma spitsbergense RepID=UPI000375243A
glutamyl-tRNA amidotransferase
cn_combo_scaffold_1461_16
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17794..18540)
-----------------
DNA (747bp)
protein (249aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G4J5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI89916.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobact
hypothetical protein
cn_combo_scaffold_1461_17
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18652..18984)
-----------------
DNA (333bp)
protein (111aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QH11_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB36777.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 3390
cn_combo_scaffold_1461_18
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19076..19813
-----------------
DNA (738bp)
protein (246aa)
electron transfer flavoprotein subunit alpha n=1 Tax=Dyadobacter beijingensis RepID=UPI00037661CC
electron transfer flavoprotein alpha/beta-subunit
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:AEI50734.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slit
cn_combo_scaffold_1461_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19959..20921
-----------------
DNA (963bp)
protein (321aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W610_DYAFD
electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ACT92490.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter f
cn_combo_scaffold_1461_20
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20932..21723)
-----------------
DNA (792bp)
protein (264aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EBU9_RUNSL
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:AEI51845.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" sourc
cn_combo_scaffold_1461_21
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21735..22325)
-----------------
DNA (591bp)
protein (197aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
peptide deformylase n=1 Tax=Dyadobacter beijingensis RepID=UPI000382E483
def; peptide deformylase
cn_combo_scaffold_1461_22
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22463..23116
-----------------
DNA (654bp)
protein (218aa)
hypothetical protein n=1 Tax=Eudoraea adriatica RepID=UPI00036CF5D6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51038.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformi
cn_combo_scaffold_1461_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23179..23583)
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00036FD77B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94551.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1461_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23644..25761)
-----------------
DNA (2118bp)
protein (706aa)
RNA binding S1 domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W497_DYAFD
RNA binding S1 domain-containing protein
RNA binding S1 domain protein {ECO:0000313|EMBL:ACT92334.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_1461_25
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25799..26554)
-----------------
DNA (756bp)
protein (252aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P042_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92629.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobact
membrane protein rbh
cn_combo_scaffold_1461_26
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26636..27529)
-----------------
DNA (894bp)
protein (298aa)
Putative lipoprotein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RT03_LEAB4
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ADQ17711.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella
cn_combo_scaffold_1461_27
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27688..30780)
-----------------
DNA (3093bp)
protein (1031aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J3R0_CYCMS
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:AEL25266.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium
CzcA family heavy metal efflux pump rbh
cn_combo_scaffold_1461_28
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30789..31925)
-----------------
DNA (1137bp)
protein (379aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J3Q9_CYCMS
RND family efflux transporter MFP subunit rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AEL25265.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium
cn_combo_scaffold_1461_29
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(31956..33251)
-----------------
DNA (1296bp)
protein (432aa)
Outer membrane efflux protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J3Q8_CYCMS
outer membrane efflux protein rbh
Outer membrane efflux protein {ECO:0000313|EMBL:AEL25264.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cy
cn_combo_scaffold_1461_30
Schleiferia thermophila, Schleiferia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33481..34857)
-----------------
DNA (1377bp)
protein (459aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1453500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Schleiferiaceae; Schle
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J3Q7_CYCMS
integral membrane sensor signal transduction histidine kinase rbh
Displaying items 1-30 of 31 in total

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