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cn_combo_scaffold_1005

Alias: CYT12_10

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1005_1
unknown

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3..80
-----------------
DNA (78bp)
protein (26aa)

This feature has no annotations

cn_combo_scaffold_1005_2
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(101..1192)
-----------------
DNA (1092bp)
protein (364aa)
FecR anti-FecI sigma factor n=1 Tax=Flavobacterium sp. F52 RepID=J1AJ84_9FLAO
anti-FecI sigma factor FecR
FecR anti-FecI sigma factor {ECO:0000313|EMBL:EJG02359.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium
cn_combo_scaffold_1005_3
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1274..1864)
-----------------
DNA (591bp)
protein (197aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EL12_RUNSL
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KFF04550.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacter
cn_combo_scaffold_1005_4
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2062..2433)
-----------------
DNA (372bp)
protein (124aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JIM8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68113.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
cn_combo_scaffold_1005_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2562..5618
-----------------
DNA (3057bp)
protein (1019aa)
amidohydrolase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C4A9E
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ACT96327.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (
cn_combo_scaffold_1005_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5717..7039
-----------------
DNA (1323bp)
protein (441aa)
Metal-dependent hydrolase superfamily protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VS93_DYAFD
metal-dependent hydrolase superfamily protein
Metal-dependent hydrolase superfamily protein {ECO:0000313|EMBL:ACT96328.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" s
cn_combo_scaffold_1005_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(7106..7372)
-----------------
DNA (267bp)
protein (89aa)
50S ribosomal protein L27 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6M3_DYAFD
50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_1005_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(7414..7725)
-----------------
DNA (312bp)
protein (104aa)
50S ribosomal protein L21 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6M4_DYAFD
50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" sourc
cn_combo_scaffold_1005_9
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8030..8803
-----------------
DNA (774bp)
protein (258aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAI5_RUNSL
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:AEI48089.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytop
cn_combo_scaffold_1005_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8825..9727
-----------------
DNA (903bp)
protein (301aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6M6_DYAFD
SMP-30/gluconolaconase/LRE domain-containing protein
SMP-30/Gluconolaconase/LRE domain protein {ECO:0000313|EMBL:ACT96087.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" sourc
cn_combo_scaffold_1005_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9691..10092
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036592D7
diacylglycerol kinase
Diacylglycerol kinase {ECO:0000313|EMBL:ACT96089.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC
cn_combo_scaffold_1005_12
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10125..10571
-----------------
DNA (447bp)
protein (149aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003621D31
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96090.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1005_13
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10737..11906
-----------------
DNA (1170bp)
protein (390aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WM83_DELAC
Iron-regulated protein {ECO:0000313|EMBL:EXU80331.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA18
peptidase M75, Imelysin
cn_combo_scaffold_1005_14
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11967..13358
-----------------
DNA (1392bp)
protein (464aa)
Thiol oxidoreductase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZS50_9BACT
Thiol oxidoreductase {ECO:0000313|EMBL:EAY26773.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
cytochrome c-containing protein
cn_combo_scaffold_1005_15
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13375..14478
-----------------
DNA (1104bp)
protein (368aa)
Iron-regulated protein A n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JVG0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ63581.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
cn_combo_scaffold_1005_16
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14959..15987
-----------------
DNA (1029bp)
protein (343aa)
Iron uptake protein A1 n=1 Tax=Cecembia lonarensis LW9 RepID=K1LH09_9BACT
Iron uptake protein A1 {ECO:0000313|EMBL:EKB49573.1}; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
Fe3+ ABC transporter periplasmic protein
cn_combo_scaffold_1005_17
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16030..17649
-----------------
DNA (1620bp)
protein (540aa)
Ferric iron ABC transporter, permease protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZMB1_9BACT
ABC transporter permease {ECO:0000313|EMBL:KEO73181.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
Fe3+ ABC transporter permease rbh
cn_combo_scaffold_1005_18
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17651..18730
-----------------
DNA (1080bp)
protein (360aa)
ABC transporter n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C2H0_9BACT
ABC transporter {ECO:0000313|EMBL:ERM84004.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 179
spermidine/putrescine ABC transporter ATPase
cn_combo_scaffold_1005_19
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18774..20021
-----------------
DNA (1248bp)
protein (416aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036F2DD8
Deoxyribonuclease HsdR {ECO:0000313|EMBL:KGO93172.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium ensh
httm domain protein
cn_combo_scaffold_1005_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20026..20913)
-----------------
DNA (888bp)
protein (296aa)
Transcription factor jumonji jmjC domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W4N0_DYAFD
transcription factor jumonji jmjC domain-containing protein
Transcription factor jumonji jmjC domain protein {ECO:0000313|EMBL:ACT95854.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobact
cn_combo_scaffold_1005_21
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21142..22260)
-----------------
DNA (1119bp)
protein (373aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=471854 species=
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W3M4_DYAFD
N-acetylglucosamine-6-phosphate deacetylase
cn_combo_scaffold_1005_22
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(22265..22573)
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003644CBF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
hypothetical protein
cn_combo_scaffold_1005_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22632..23855)
-----------------
DNA (1224bp)
protein (408aa)
Beta-ketoacyl synthase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW88_DYAFD
beta-ketoacyl synthase
Beta-ketoacyl synthase {ECO:0000313|EMBL:ACT93220.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC
cn_combo_scaffold_1005_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23898..26732)
-----------------
DNA (2835bp)
protein (945aa)
DNA polymerase I {ECO:0000313|EMBL:ACT92345.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACT92345.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source
DNA polymerase I n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W4A8_DYAFD
DNA polymerase I
cn_combo_scaffold_1005_25
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26912..27478
-----------------
DNA (567bp)
protein (189aa)
Collagen triple helix repeat-containing protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EUI7_EMTOG
Collagen triple helix repeat-containing protein {ECO:0000313|EMBL:AFK03340.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" s
Collagen triple helix repeat-containing protein
cn_combo_scaffold_1005_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27504..28940)
-----------------
DNA (1437bp)
protein (479aa)
ATP-dependent exoDNAse (Exonuclease V) n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VX30_DYAFD
ATP-dependent exoDNAse
ATP-dependent exoDNAse (Exonuclease V) {ECO:0000313|EMBL:ACT91503.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter ferment
cn_combo_scaffold_1005_27
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29037..29471
-----------------
DNA (435bp)
protein (145aa)
Putative signal transduction protein with CBS domains n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GMT5_9BACT
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:CCH55213.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibri
putative signal transduction protein
cn_combo_scaffold_1005_28
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29519..30055
-----------------
DNA (537bp)
protein (179aa)
NUDIX hydrolase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QN29_SPILD
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADB37513.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM
cn_combo_scaffold_1005_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

30052..30939
-----------------
DNA (888bp)
protein (296aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003690C80
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91506.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1005_30
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31060..31533
-----------------
DNA (474bp)
protein (158aa)
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
phosphopantetheine adenylyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036516CC
Displaying items 1-30 of 43 in total

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