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cn_combo_scaffold_1005_3

Organism: CN-SCN_Cytophagaceae_12x

partial RP 39 / 55 BSCG 38 / 51 ASCG 12 / 38
Location: comp(1274..1864)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EL12_RUNSL similarity UNIREF
DB: UNIREF100
  • Identity: 44.2
  • Coverage: 197.0
  • Bit_score: 148
  • Evalue 9.70e-33
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 44.2
  • Coverage: 197.0
  • Bit_score: 148
  • Evalue 2.70e-33
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KFF04550.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacter similarity UNIPROT
DB: UniProtKB
  • Identity: 43.9
  • Coverage: 196.0
  • Bit_score: 148
  • Evalue 8.00e-33

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Taxonomy

Flavobacterium reichenbachii → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 591
ATGAATGATGTTACAAAAAGTGATGAGGAGCTGTGGCAGCTAACCAGGGAAAATCATGAAAGCTCGTTTAATCAGTTGATGGAACGGCATCTGTCTTCATTGCTCCATTATGGGGGGAAATTCTCTGAAGATTACGCGCTGGTCCAGGATTGCGTGCAGGATGTACTGGCAGACCTATGGCTGAGGAGGACCCGGGAAGCGCCTATTTTGTCTGTGCGCGCCTACTTGTTTGCAGCCGTACGTAACCGCGTGTGCCGTGAGGCGAAGAAGGCCGGGCGAGCCGGGATACTCGACGAAAATGACGAATATTCGTCATTTGAAGCCGTATTTTCAGTAGAGGAAAGCTGGATAGCCGACGAGTCGGAGCACGAAAGGCTCCATAAATTAAACCACCTGGTCAACCGGCTGCCGCCCCGCCAGAAAGAGATCCTGTACCTCCGCTACTACCAGGGACTGGAAAAAAACCAGATCGCGGAAGTATTGGACATTCACTATCAATCAGTTTCCAACCTGCTTCACCGGGCGCTGACTGCCCTTCGCAAGCAATTTCCGGTACTGCTCTATGTATTTTTAGCCTGGAAATATCTTTAG
PROTEIN sequence
Length: 197
MNDVTKSDEELWQLTRENHESSFNQLMERHLSSLLHYGGKFSEDYALVQDCVQDVLADLWLRRTREAPILSVRAYLFAAVRNRVCREAKKAGRAGILDENDEYSSFEAVFSVEESWIADESEHERLHKLNHLVNRLPPRQKEILYLRYYQGLEKNQIAEVLDIHYQSVSNLLHRALTALRKQFPVLLYVFLAWKYL*