ggKbase home page

cn_combo_scaffold_795

Alias: CYT12_4

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_795_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1..546)
-----------------
DNA (546bp)
protein (182aa)
Tyrosine recombinase XerC n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXU9_DYAFD
integrase family protein
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_795_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(609..2738)
-----------------
DNA (2130bp)
protein (710aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase {ECO:0000313|EMBL:AEI47602.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEI47602.1};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagale
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC71_RUNSL
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase rbh
cn_combo_scaffold_795_3
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3187..3660
-----------------
DNA (474bp)
protein (158aa)
Ferric uptake regulator, Fur family n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J1F0_CYCMS
Fur family ferric uptake regulator
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:EON79091.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" sourc
cn_combo_scaffold_795_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3854..4366)
-----------------
DNA (513bp)
protein (171aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003740E0E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96092.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_795_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4434..6839)
-----------------
DNA (2406bp)
protein (802aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytop
Ribonuclease R n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VV97_DYAFD
ribonuclease R
cn_combo_scaffold_795_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6879..7622)
-----------------
DNA (744bp)
protein (248aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VV96_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94919.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_795_7
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7647..8381)
-----------------
DNA (735bp)
protein (245aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000
Octanoyltransferase n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BYS7_9BACT
lipoate-protein ligase B
cn_combo_scaffold_795_8
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8501..8857
-----------------
DNA (357bp)
protein (119aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037CC478
UPF0102 protein BN8_06241 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
cn_combo_scaffold_795_9
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8873..9358)
-----------------
DNA (486bp)
protein (162aa)
GAF domain-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EBE3_RUNSL
GAF domain-containing protein
GAF domain-containing protein {ECO:0000313|EMBL:AEI47526.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATC
cn_combo_scaffold_795_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9446..10279
-----------------
DNA (834bp)
protein (278aa)
Formyltetrahydrofolate deformylase {ECO:0000313|EMBL:AEI48128.1}; EC=3.5.1.10 {ECO:0000313|EMBL:AEI48128.1};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Ru
Formyltetrahydrofolate deformylase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ECS0_RUNSL
formyltetrahydrofolate deformylase
cn_combo_scaffold_795_11
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10315..11106)
-----------------
DNA (792bp)
protein (264aa)
Transcriptional regulator n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FUJ7_ECHVK
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA76698.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (stra
cn_combo_scaffold_795_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11336..12559
-----------------
DNA (1224bp)
protein (408aa)
Major facilitator superfamily MFS_1 n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QLS4_SPILD
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADB40364.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spiro
cn_combo_scaffold_795_13
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12667..14166
-----------------
DNA (1500bp)
protein (500aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;"
arabinose isomerase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003662F4F
L-fucose isomerase-like protein
cn_combo_scaffold_795_14
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14225..17410
-----------------
DNA (3186bp)
protein (1062aa)
TonB-dependent receptor n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WLS3_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:EPR65163.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-
SusC/RagA family TonB-linked outer membrane protein
cn_combo_scaffold_795_15
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17473..18867
-----------------
DNA (1395bp)
protein (465aa)
Putative nutrient binding outer membrane protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V6E9_9BACT
Putative nutrient binding outer membrane protein {ECO:0000313|EMBL:EPR65162.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cy
RagB/SusD domain-containing protein
cn_combo_scaffold_795_16
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18950..22219
-----------------
DNA (3270bp)
protein (1090aa)
Putative outer membrane protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB80_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ23912.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V4
SusC/RagA family TonB-linked outer membrane protein
cn_combo_scaffold_795_17
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22277..23887
-----------------
DNA (1611bp)
protein (537aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB79_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ23913.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V4
lipoprotein
cn_combo_scaffold_795_18

Not on your lists

23917..24954
-----------------
DNA (1038bp)
protein (346aa)
Beta-ureidopropionase (EC:3.5.1.6)
Putative nitrilase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WMU9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN83421.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cn_combo_scaffold_795_19
RLO_PLX_64_10, Bacteria

Not on your lists

25112..27196
-----------------
DNA (2085bp)
protein (695aa)
Putative uncharacterized protein n=1 Tax=Prevotella maculosa OT 289 RepID=H1HJZ7_9BACT
heparinase II/III family protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
heparinase II/III family protein
cn_combo_scaffold_795_20
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27293..29818
-----------------
DNA (2526bp)
protein (842aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QLS0_SPILD
Uncharacterized protein {ECO:0000313|EMBL:ADB40360.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma lingual
hypothetical protein
cn_combo_scaffold_795_21
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30276..31019
-----------------
DNA (744bp)
protein (248aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WW38_9PORP
polysaccharide deacetylase
Uncharacterized protein {ECO:0000313|EMBL:EGK06653.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22
cn_combo_scaffold_795_22
unknown

Not on your lists

31035..31247
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

cn_combo_scaffold_795_23
Aureobasidium namibiae, Aureobasidium, Dothideales, Dothideomycetidae, Ascomycota, Fungi

Not on your lists

31244..31993
-----------------
DNA (750bp)
protein (250aa)
Glycoside hydrolase family 16 protein {ECO:0000313|EMBL:KEQ77890.1}; TaxID=1043004 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Dothideales; Aure
cn_combo_scaffold_795_24
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32013..36782
-----------------
DNA (4770bp)
protein (1590aa)
Glycoside hydrolase family 2 sugar binding protein id=3960923 bin=GWF2_Bacteroidetes_41_9 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
glycoside hydrolase Tax=GWA2_Bacteroidetes_40_15_curated
glycoside hydrolase
cn_combo_scaffold_795_25
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

36888..37808
-----------------
DNA (921bp)
protein (307aa)
GlcNAc-PI de-N-acetylase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003665EF2
LmbE family protein
LmbE family protein {ECO:0000313|EMBL:ACT92401.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter ferment
cn_combo_scaffold_795_26
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38128..38835
-----------------
DNA (708bp)
protein (236aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2RZX1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK88801.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
hypothetical protein
cn_combo_scaffold_795_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

39023..42499
-----------------
DNA (3477bp)
protein (1159aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003756070
putative phytochrome sensor protein
Putative phytochrome sensor protein {ECO:0000313|EMBL:ACT92748.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans
cn_combo_scaffold_795_28
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

42585..43217
-----------------
DNA (633bp)
protein (211aa)
Putative transcriptional regulatory protein NarL n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7NLZ4_9BACT
Putative transcriptional regulatory protein NarL {ECO:0000313|EMBL:EMR02775.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesi
Transcriptional regulatory protein liaR
cn_combo_scaffold_795_29
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

43512..47318
-----------------
DNA (3807bp)
protein (1269aa)
Membrane-bound dehydrogenase domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC83_RUNSL
membrane-bound dehydrogenase domain-containing protein
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:AEI47614.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source=
cn_combo_scaffold_795_30
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47403..49622)
-----------------
DNA (2220bp)
protein (740aa)
Isocitrate dehydrogenase, NADP-dependent {ECO:0000313|EMBL:EFK56759.1}; EC=1.1.1.42 {ECO:0000313|EMBL:EFK56759.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales;
isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase, NADP-dependent n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VSK8_9SPHI
Displaying items 1-30 of 42 in total

View Taxonomy