ggKbase home page

cn_combo_scaffold_1944

Alias: CYT12_38

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1944_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2..601)
-----------------
DNA (600bp)
protein (200aa)
Glycosyl transferase family 2 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXY0_DYAFD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACT95163.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_1944_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(738..1766)
-----------------
DNA (1029bp)
protein (343aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales;
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXQ8_DYAFD
pyruvate dehydrogenase E1 component subunit alpha
cn_combo_scaffold_1944_3
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1973..3061
-----------------
DNA (1089bp)
protein (363aa)
DNA replication and repair protein RecF n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ETJ0_EMTOG
DNA replication and repair protein recF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emtici
cn_combo_scaffold_1944_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3296..4570
-----------------
DNA (1275bp)
protein (425aa)
signal protein PDZ n=1 Tax=Dyadobacter beijingensis RepID=UPI00036A74D7
PDZ/DHR/GLGF domain-containing protein
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:ACT95074.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter
cn_combo_scaffold_1944_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4608..5291
-----------------
DNA (684bp)
protein (228aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXP2_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95075.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1944_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5350..6180
-----------------
DNA (831bp)
protein (277aa)
Aminotransferase class IV n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTZ9_DYAFD
class IV aminotransferase
Aminotransferase class IV {ECO:0000313|EMBL:ACT94767.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain A
cn_combo_scaffold_1944_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6201..6929)
-----------------
DNA (729bp)
protein (243aa)
ABC transporter permease; gliding motility-associated protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2V8_DYAFD
ABC transporter permease
ABC transporter permease gliding motility-associated protein {ECO:0000313|EMBL:ACT95671.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" sourc
cn_combo_scaffold_1944_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6972..7487)
-----------------
DNA (516bp)
protein (172aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2V7_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95670.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1944_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7580..8131)
-----------------
DNA (552bp)
protein (184aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2V6_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95669.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1944_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8151..9434)
-----------------
DNA (1284bp)
protein (428aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; Flags: Precursor;; TaxID=471854 species="Bacteria; Bac
Dihydroorotase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2V5_DYAFD
dihydroorotase, multifunctional complex type
cn_combo_scaffold_1944_11
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9580..9960)
-----------------
DNA (381bp)
protein (127aa)
Glycine cleavage system H protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JLB1_9BACT
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtech
glycine cleavage system H protein
cn_combo_scaffold_1944_12
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10053..11177)
-----------------
DNA (1125bp)
protein (375aa)
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ACT96961.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ACT96961.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; C
coproporphyrinogen III oxidase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003717CD6
oxygen-independent coproporphyrinogen III oxidase
cn_combo_scaffold_1944_13
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(11260..11700)
-----------------
DNA (441bp)
protein (147aa)
50S ribosomal protein L9 n=1 Tax=Dyadobacter beijingensis RepID=UPI00035F5464
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strai
cn_combo_scaffold_1944_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(11729..11980)
-----------------
DNA (252bp)
protein (84aa)
30S ribosomal protein S18 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW99_DYAFD
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_1944_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(11984..12358)
-----------------
DNA (375bp)
protein (125aa)
30S ribosomal protein S6 n=1 Tax=Dyadobacter beijingensis RepID=UPI000365FB5E
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strai
cn_combo_scaffold_1944_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12573..13391)
-----------------
DNA (819bp)
protein (273aa)
membrane protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036EAFBE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91495.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1944_17
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13469..14257)
-----------------
DNA (789bp)
protein (263aa)
dihydropteroate synthase (EC:2.5.1.15)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003777119
Dihydropteroate synthase {ECO:0000313|EMBL:EJF11793.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
cn_combo_scaffold_1944_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14358..14909
-----------------
DNA (552bp)
protein (184aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VX20_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91493.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1944_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15026..16120
-----------------
DNA (1095bp)
protein (365aa)
DoxX family protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036FD2AD
DoxX family protein
DoxX family protein {ECO:0000313|EMBL:ACT91492.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 70
cn_combo_scaffold_1944_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16152..16643
-----------------
DNA (492bp)
protein (164aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophag
shikimate kinase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003676A4E
shikimate kinase
cn_combo_scaffold_1944_21
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16736..17623
-----------------
DNA (888bp)
protein (296aa)
ABC transporter permease n=1 Tax=Dyadobacter beijingensis RepID=UPI00037785D9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93684.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1944_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17628..18344)
-----------------
DNA (717bp)
protein (239aa)
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W7S5_DYAFD
uroporphyrin-III C/tetrapyrrole methyltransferase
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase {ECO:0000313|EMBL:ACT96269.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.
cn_combo_scaffold_1944_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18435..18926)
-----------------
DNA (492bp)
protein (164aa)
ferritin Dps family protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003745098
ferritin Dps family protein
Ferritin Dps family protein {ECO:0000313|EMBL:ACT94161.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain
cn_combo_scaffold_1944_24
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18946..20583)
-----------------
DNA (1638bp)
protein (546aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GEG7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52292.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
peptidase M28
cn_combo_scaffold_1944_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20700..22613)
-----------------
DNA (1914bp)
protein (638aa)
Peptidase S9 prolyl oligopeptidase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT41_9SPHI
peptidase S9
Peptidase S9 {ECO:0000313|EMBL:AHF16742.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cn_combo_scaffold_1944_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22892..24280
-----------------
DNA (1389bp)
protein (463aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWW6_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96866.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1944_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24430..25770
-----------------
DNA (1341bp)
protein (447aa)
oxidoreductase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037694DE
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACT96867.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobact
cn_combo_scaffold_1944_28
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25783..26835
-----------------
DNA (1053bp)
protein (351aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWW8_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96868.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1944_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27045..27989
-----------------
DNA (945bp)
protein (315aa)
Cytochrome-c peroxidase {ECO:0000313|EMBL:ACT92790.1}; EC=1.11.1.5 {ECO:0000313|EMBL:ACT92790.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;
Cytochrome-c peroxidase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VRT7_DYAFD
cytochrome-c peroxidase
Displaying 29 items

View Taxonomy