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cn_combo_scaffold_1964_7

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(4434..5117)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CF1D4B related cluster n=1 Tax=unknown RepID=UPI0003CF1D4B similarity UNIREF
DB: UNIREF100
  • Identity: 87.2
  • Coverage: 227.0
  • Bit_score: 423
  • Evalue 1.10e-115
Conjugal transfer protein TrbF {ECO:0000313|EMBL:ESY62548.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizob similarity UNIPROT
DB: UniProtKB
  • Identity: 87.2
  • Coverage: 227.0
  • Bit_score: 423
  • Evalue 1.50e-115
type IV secretory pathway, TrbF component similarity KEGG
DB: KEGG
  • Identity: 86.3
  • Coverage: 227.0
  • Bit_score: 420
  • Evalue 2.50e-115

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Taxonomy

Mesorhizobium sp. LNHC252B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 684
ATGTTCAAACGGCCCGCAACCCATTACGGGAAGACGCCCGAACCCGAGACCCCGTACCAGAGGGCCGCGCAGATCTGGGACGAGCGCATCGGCTCGGCTCGCGTCCAGGCAAAAAACTGGCGGCTGATGGCCTTCGGTTCGCTGCTGCTGGCGGGCGGCTTCGCTTCAGCTTTGGTCTGGCAGTCGGCCCGCGGCACCGTCGTTCCCTGGGTCGTACAGGTCGATAATCTGGGCCAGTCGCAGGCAGTCGCGCCCGCTGTTGCCGATTACCGTCCAACTGATCCCCAGTTTGCTTTCCATCTCGCCCGTTTCATCGAGCAGACACGCTCGATCCCGGCCGACGCCGTCATCGTGCGGCAGAACTGGCTGCGCGCCTATGACTTCACGACCGATCGTGGCGCCATGGCGCTCAATGACTACGCGCGCGCCAACGACCCTTTCAGCAAGGTCGGCCGCACACAGATCGCGGTCGATGTGTCGAGCGTCATCCGTGCCTCGCCAGACAGCTTCCGTGTTGCCTGGGTACAACGCACCTATCAGGACGGTTCGCTCGCCTCGACAGAACGCTGGACCGCCATCCTCACCATCGTCGTGCAGCCACCGCGCGATGCCGAAAAACTACGGGCCAATCCGCTCGGAATCTACGTCAACGCCATCAACTGGTCGAAGGAGCTGGGACAATGA
PROTEIN sequence
Length: 228
MFKRPATHYGKTPEPETPYQRAAQIWDERIGSARVQAKNWRLMAFGSLLLAGGFASALVWQSARGTVVPWVVQVDNLGQSQAVAPAVADYRPTDPQFAFHLARFIEQTRSIPADAVIVRQNWLRAYDFTTDRGAMALNDYARANDPFSKVGRTQIAVDVSSVIRASPDSFRVAWVQRTYQDGSLASTERWTAILTIVVQPPRDAEKLRANPLGIYVNAINWSKELGQ*