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berkeley_reactor_200306_planktonic_scaffold_32813

Search features with annotation key words

Displaying items 1-30 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_32813_1
unknown

Not on your lists

comp(540..1319)
-----------------
DNA (780bp)
protein (260aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32813_2
Bradyrhizobium sp. UASWS1016, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1612..3009)
-----------------
DNA (1398bp)
protein (466aa)
Contig60, whole genome shotgun sequence {ECO:0000313|EMBL:KIU58091.1}; Flags: Fragment;; TaxID=1566379 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. UASWS1016.;"
berkeley_reactor_200306_planktonic_scaffold_32813_3
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3006..3536)
-----------------
DNA (531bp)
protein (177aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B437D8
Uncharacterized protein {ECO:0000313|EMBL:CCV16407.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_32813_4
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3537..5366)
-----------------
DNA (1830bp)
protein (610aa)
hypothetical protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B48166
Putative ubiquitin-activating enzyme {ECO:0000313|EMBL:CCV16406.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_32813_5
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5341..6345)
-----------------
DNA (1005bp)
protein (335aa)
hypothetical protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B694C9
Uncharacterized protein {ECO:0000313|EMBL:KIH76243.1}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_32813_6
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(6350..7450)
-----------------
DNA (1101bp)
protein (367aa)
Patatin id=3531851 bin=GWA1_Deltaproteobacteria_52_35 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
patatin
Tax=GWA1_Bdellovibrionales_52_35_curated
berkeley_reactor_200306_planktonic_scaffold_32813_trna_1
unknown

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comp(8045..8118)
-----------------
DNA (74bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_32813_7
R_WOR_1_53_15, WOR-1, Bacteria

Not on your lists

comp(8152..10848)
-----------------
DNA (2697bp)
protein (899aa)
Uncharacterized protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETX9_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_WOR_1_53_15_curated
berkeley_reactor_200306_planktonic_scaffold_32813_8
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(10848..12446)
-----------------
DNA (1599bp)
protein (533aa)
NAD(P)H-quinone oxidoreductase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.- {ECO:0000256|HAMAP-Rule:MF_00445};; NAD(P)H dehydrogenase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00445}; NADH-plastoquinone oxidoreductase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1, subunit 2 {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=313612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
NAD(P)H-quinone oxidoreductase subunit 2 n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YX63_LYNSP
ndhB; NADH dehydrogenase subunit 2
berkeley_reactor_200306_planktonic_scaffold_32813_9
Caldatribacterium saccharofermentans, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

12767..13939
-----------------
DNA (1173bp)
protein (391aa)
carA; carbamoyl phosphate synthase small subunit (EC:6.3.5.5)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI000371F5E7
Tax=Caldatribacterium saccharofermentans
berkeley_reactor_200306_planktonic_scaffold_32813_10
Prevotella sp. oral taxon 299, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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13967..14641
-----------------
DNA (675bp)
protein (225aa)
HAD hydrolase, family IA n=1 Tax=Prevotella sp. oral taxon 299 str. F0039 RepID=D3IBF2_9BACT
HAD hydrolase, family IA
HAD hydrolase, family IA {ECO:0000313|EMBL:EFC71051.1}; TaxID=575614 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 299 str. F0039.;"
berkeley_reactor_200306_planktonic_scaffold_32813_11
R_Melainabacteria_34_12, Melainabacteria, Bacteria

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15149..16420
-----------------
DNA (1272bp)
protein (424aa)
Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
berkeley_reactor_200306_planktonic_scaffold_32813_12
unknown

Not on your lists

16425..17015
-----------------
DNA (591bp)
protein (197aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32813_13
Clostridium sp. CAG:729, Melainabacteria, Bacteria

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17069..18625
-----------------
DNA (1557bp)
protein (519aa)
seg 311..325 id=161294 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CDE88055.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
berkeley_reactor_200306_planktonic_scaffold_32813_14
R_Melainabacteria_34_12, Melainabacteria, Bacteria

Not on your lists

18622..19374
-----------------
DNA (753bp)
protein (251aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P928_9CLOT
ABC transporter-like protein
Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
berkeley_reactor_200306_planktonic_scaffold_32813_15
R_Melainabacteria_34_12, Melainabacteria, Bacteria

Not on your lists

19371..20468
-----------------
DNA (1098bp)
protein (366aa)
Ycf84 protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5KAS2_9CLOT
permease
Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
berkeley_reactor_200306_planktonic_scaffold_32813_16
RifOxyA12_full_Elusimicrobia_57_11_curated, Elusimicrobia, Bacteria

Not on your lists

20761..22155
-----------------
DNA (1395bp)
protein (465aa)
Putative O-linked N-acetylglucosamine transferase, SPINDLY family n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y7E9_THIV6
putative O-linked N-acetylglucosamine transferase, SPINDLY family
Tax=RifOxyA12_full_Elusimicrobia_57_11_curated
berkeley_reactor_200306_planktonic_scaffold_32813_17
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22239..22682
-----------------
DNA (444bp)
protein (148aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Shikimate kinase n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9J1J5_9FIRM
berkeley_reactor_200306_planktonic_scaffold_32813_18
unknown

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22782..23408
-----------------
DNA (627bp)
protein (209aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32813_19
Pseudanabaena biceps, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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23408..23851
-----------------
DNA (444bp)
protein (148aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=927668 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena biceps PCC 7429.;"
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
AroQ: 3-dehydroquinate dehydrogenase id=3898975 bin=GWF2_Lentisphaerae_52_8 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
berkeley_reactor_200306_planktonic_scaffold_32813_20
unknown

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comp(23842..24999)
-----------------
DNA (1158bp)
protein (386aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32813_21
Cyanothece sp. PCC 8801, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25027..26175
-----------------
DNA (1149bp)
protein (383aa)
TPR repeat-containing protein n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K3M3_CYAP8
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACK65365.1}; Flags: Precursor;; TaxID=41431 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 8801) (Synechococcus sp. (strain PCC 8801 /; RF-1)).;"
berkeley_reactor_200306_planktonic_scaffold_32813_22
unknown

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26184..26750
-----------------
DNA (567bp)
protein (189aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32813_23
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26760..27458
-----------------
DNA (699bp)
protein (233aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7B0_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:CBA26907.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
NUDIX hydrolase
berkeley_reactor_200306_planktonic_scaffold_32813_24
unknown

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comp(27459..27935)
-----------------
DNA (477bp)
protein (159aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_32813_25
Bacteriovorax sp. BAL6_X, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28134..28478
-----------------
DNA (345bp)
protein (115aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Bacteriovorax sp. BAL6_X RepID=T0CCN1_9DELT
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EPZ50544.1}; TaxID=1201290 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp. BAL6_X.;"
iscA; hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_32813_26
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

28544..30247
-----------------
DNA (1704bp)
protein (568aa)
Putative Aminomethyltransferase GcvT, fused with Tetratricopeptide repeats (Modular protein) {ECO:0000313|EMBL:CCQ91003.1}; EC=2.1.2.10 {ECO:0000313|EMBL:CCQ91003.1};; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
Putative Aminomethyltransferase GcvT, fused with Tetratricopeptide repeats (Modular protein) n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YKJ1_9BACT
putative aminomethyltransferase
berkeley_reactor_200306_planktonic_scaffold_32813_27
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

30241..31038
-----------------
DNA (798bp)
protein (266aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZMY8_ANACC
ABC-type transporter, integral membrane subunit
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AFZ59912.1}; TaxID=272123 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
berkeley_reactor_200306_planktonic_scaffold_32813_28
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

31067..32527
-----------------
DNA (1461bp)
protein (487aa)
Outer membrane efflux protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QQV4_9CYAN
tolC; outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AGY60090.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
berkeley_reactor_200306_planktonic_scaffold_32813_29
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

Not on your lists

comp(32530..35391)
-----------------
DNA (2862bp)
protein (954aa)
mta:Moth_0863 ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] id=18731 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
Displaying items 1-30 of 188 in total

View Taxonomy