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berkeley_reactor_200306_biofilm_scaffold_81192

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Displaying items 1-30 of 159 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_81192_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..417)
DNA (417bp) protein (139aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUC1_CHIPD
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ACU59161.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_81192_2
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(529..1755)
DNA (1227bp) protein (409aa)
fibronectin type III, partial id=1882569 bin=GWE2_Bacteroidetes_42_39 species=Gillisia marina genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=GWE2_Bacteroidetes_42_39_curated
berkeley_reactor_200306_biofilm_scaffold_81192_3
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2052..3512)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00035E22D6
Uncharacterized protein {ECO:0000313|EMBL:ERM80926.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
RagB/SusD domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_81192_4
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3523..7011)
DNA (3489bp) protein (1163aa)
TonB-dependent receptor plug n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CAG4_SPHS2
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADZ80934.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_biofilm_scaffold_81192_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7128..8324)
DNA (1197bp) protein (399aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKS0_NIAKG
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99749.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_81192_6
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8526..9110)
DNA (585bp) protein (195aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH42_9SPHI
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM35123.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_biofilm_scaffold_81192_7
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9516..12077)
DNA (2562bp) protein (854aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037C1E5F
Uncharacterized protein {ECO:0000313|EMBL:KIA89480.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
enterotoxin
berkeley_reactor_200306_biofilm_scaffold_81192_8
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12107..13387)
DNA (1281bp) protein (427aa)
Uncharacterized protein id=3900282 bin=GWA2_Bacteroidetes_A19_40_15 species=unknown genus=Rahnella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_biofilm_scaffold_81192_9
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13396..15060)
DNA (1665bp) protein (555aa)
Conserved hypothetical periplasmic protein n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7J7T1_9PORP
Conserved hypothetical periplasmic protein {ECO:0000313|EMBL:CDE59766.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_81192_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15102..17549)
DNA (2448bp) protein (816aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZV58_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC95873.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_81192_11
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17701..19050)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000372F3AC
Uncharacterized protein {ECO:0000313|EMBL:KKB52173.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_81192_12
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19059..20945)
DNA (1887bp) protein (629aa)
Beta-N-acetylhexosaminidase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PA57_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ETZ21407.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
beta-N-acetylhexosaminidase
berkeley_reactor_200306_biofilm_scaffold_81192_13
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21069..22832)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2AS60_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS18497.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
RagB/SusD domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_81192_14
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22844..26254)
DNA (3411bp) protein (1137aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides RepID=N2AXU3_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EOS18498.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SusC/RagA family TonB-linked outer membrane protein
berkeley_reactor_200306_biofilm_scaffold_81192_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26508..27596)
DNA (1089bp) protein (363aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8X6_NIAKG
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEW02333.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_81192_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27750..28412)
DNA (663bp) protein (221aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8X7_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW02334.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_81192_17
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28413..29207)
DNA (795bp) protein (265aa)
bglA_1; Beta-glucanase precursor (EC:3.2.1.73)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B1U9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS16882.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
berkeley_reactor_200306_biofilm_scaffold_81192_18
Nematostella vectensis, Nematostella, Actiniaria, Hexacorallia, Cnidaria, Metazoa

Not on your lists

comp(29404..30216)
DNA (813bp) protein (271aa)
Predicted protein n=1 Tax=Nematostella vectensis RepID=A8DW42_NEMVE
Predicted protein {ECO:0000313|EMBL:EDO25567.1}; TaxID=45351 species="Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella.;" source="Nematostella vectensis (Starlet sea anemone).;"
5'-nucleotidase
berkeley_reactor_200306_biofilm_scaffold_81192_19
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30324..31571)
DNA (1248bp) protein (416aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ET55_EMTOG
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AFK02858.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
berkeley_reactor_200306_biofilm_scaffold_81192_20
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31612..33093)
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C9U7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EIJ40390.1}; Flags: Precursor;; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_81192_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33129..36347)
DNA (3219bp) protein (1073aa)
TonB-dependent receptor plug n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPV4_CHIPD
TonB-dependent receptor {ECO:0000313|EMBL:KIC90388.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
TonB-dependent receptor plug
berkeley_reactor_200306_biofilm_scaffold_81192_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36497..37195
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000360B6D5
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:GAO42707.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
regulatory protein TetR
berkeley_reactor_200306_biofilm_scaffold_81192_23
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37173..37433)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C9V1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EIJ40394.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_81192_24
unknown

Not on your lists

comp(37498..37767)
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_81192_25
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37925..38527
DNA (603bp) protein (201aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W720_DYAFD
Uncharacterized protein {ECO:0000313|EMBL:KIC96220.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_biofilm_scaffold_81192_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38721..39980
DNA (1260bp) protein (420aa)
anti-sigma factor n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6A52D
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99801.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_81192_27
Bacteroides oleiciplenus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40205..43645
DNA (3441bp) protein (1147aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000369B13D
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKU87440.1}; TaxID=742727 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides oleiciplenus YIT 12058.;"
TonB-dependent Receptor Plug Domain./TonB dependent receptor.
berkeley_reactor_200306_biofilm_scaffold_81192_28
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43657..45720
DNA (2064bp) protein (688aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000371C97B
Uncharacterized protein {ECO:0000313|EMBL:EGK02000.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
SusD family.
berkeley_reactor_200306_biofilm_scaffold_81192_29
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

45757..46551
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C1405
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
berkeley_reactor_200306_biofilm_scaffold_81192_30
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

46806..48971
DNA (2166bp) protein (722aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FSB4_ECHVK
Uncharacterized protein {ECO:0000313|EMBL:ETZ21637.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
Displaying items 1-30 of 159 in total

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