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berkeley_reactor_200306_biofilm_scaffold_2069

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_2069_1
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

588..2237
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L0E7_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE48459.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_biofilm_scaffold_2069_2
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2623..4206
DNA (1584bp) protein (528aa)
Na+/H+ antiporter n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FW39_9SPHI
Na+/H+ antiporter {ECO:0000313|EMBL:EEI92819.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
nhaP; sodium/hydrogen antiporter
berkeley_reactor_200306_biofilm_scaffold_2069_3
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4219..4743
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SC82_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY51679.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_biofilm_scaffold_2069_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4756..5229
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSS3_9SPHI
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:AHF16713.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_2069_5
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5220..5804
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037F16F6
Uncharacterized protein {ECO:0000313|EMBL:ETZ19420.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
putative cyclic nucleotide binding regulatory protein
berkeley_reactor_200306_biofilm_scaffold_2069_6
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5870..6280
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036665EB
Uncharacterized protein {ECO:0000313|EMBL:ETZ19421.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
bleomycin resistance protein
berkeley_reactor_200306_biofilm_scaffold_2069_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6560..7855)
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037C78AB
Uncharacterized protein {ECO:0000313|EMBL:GAO43078.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2069_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8254..9612)
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036A5DFB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59873.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_2069_9
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9689..10513)
DNA (825bp) protein (275aa)
Formate/nitrite transporter n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6V3_9SPHI
Formate/nitrite transporter {ECO:0000313|EMBL:EDM38639.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
formate transporter
berkeley_reactor_200306_biofilm_scaffold_2069_10
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10593..10976)
DNA (384bp) protein (128aa)
Probable nitrite reductase (NAD(P)H), small subunit n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6V4_9SPHI
Probable nitrite reductase (NAD(P)H), small subunit {ECO:0000313|EMBL:EDM38640.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
assimilatory nitrite reductase (NAD(P)H) small subunit
berkeley_reactor_200306_biofilm_scaffold_2069_11
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11008..13527)
DNA (2520bp) protein (840aa)
nitrite reductase n=1 Tax=Segetibacter koreensis RepID=UPI0003663247
Nitrite reductase {ECO:0000313|EMBL:KIC90724.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
assimilatory nitrite reductase (NAD(P)H) large subunit
berkeley_reactor_200306_biofilm_scaffold_2069_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13713..14480
DNA (768bp) protein (256aa)
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NV27_9SPHI
uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AHF16311.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_2069_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14473..15207
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037FE7D8
Transcriptional regulator {ECO:0000313|EMBL:KIC90725.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
CarD family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_2069_14
unknown

Not on your lists

15573..15860
DNA (288bp) protein (96aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2069_15
unknown

Not on your lists

15873..15962
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2069_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16157..16474
DNA (318bp) protein (106aa)
Putative histone H1-like protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJP9_CHIPD
histone H1-like protein
Putative histone H1-like protein {ECO:0000313|EMBL:ACU63809.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_2069_17
unknown

Not on your lists

16578..16730
DNA (153bp) protein (51aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2069_18
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16654..17118)
DNA (465bp) protein (155aa)
Putative NTP pyrophosphohydrolase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVZ6_SOLCM
putative NTP pyrophosphohydrolase
Putative NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFD06899.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_biofilm_scaffold_2069_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17270..18163)
DNA (894bp) protein (298aa)
Aldo/keto reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQY1_NIAKG
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:AEV97880.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2069_20
unknown

Not on your lists

18244..18450
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2069_21
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18404..19156
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003752705
cupin
Cupin {ECO:0000313|EMBL:AKD56463.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_biofilm_scaffold_2069_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19245..20345)
DNA (1101bp) protein (367aa)
Glucose-fructose oxidoreductase {ECO:0000313|EMBL:AEW00452.1}; EC=1.1.99.28 {ECO:0000313|EMBL:AEW00452.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
glucose-fructose oxidoreductase n=1 Tax=Segetibacter koreensis RepID=UPI00037EF622
Glucose-fructose oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_2069_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20689..21468
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J762_CYCMS
Uncharacterized protein {ECO:0000313|EMBL:KIC96235.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2069_24
unknown

Not on your lists

comp(21564..21731)
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2069_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21756..23690)
DNA (1935bp) protein (645aa)
von Willebrand factor type A n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFH6_NIAKG
von Willebrand factor type A
von Willebrand factor type A {ECO:0000313|EMBL:AEV98407.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2069_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23780..24379
DNA (600bp) protein (200aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS7_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV96811.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2069_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24399..25709
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS6_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96810.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2069_28
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25856..26686
DNA (831bp) protein (277aa)
Tetratricopeptide TPR_2 repeat-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS5_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89431.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2069_29
unknown

Not on your lists

comp(27108..27500)
DNA (393bp) protein (131aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2069_30
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

comp(27517..28662)
DNA (1146bp) protein (382aa)
Strongly similar to beta-ketoacyl acyl carrier protein synthase II n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q2X4_9BACT
beta-ketoacyl synthase
Tax=GWB2_Planctomycetes_41_19_curated
Displaying items 1-30 of 35 in total

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