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berkeley_reactor_200306_biofilm_scaffold_70618

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Displaying items 1-30 of 189 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_70618_1
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

214..1665
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003624EB1
Uncharacterized protein {ECO:0000313|EMBL:GAL86278.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_70618_2
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1787..2494
DNA (708bp) protein (236aa)
Nucleotidyl transferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIQ2_NIAKG
Nucleotidyltransferase {ECO:0000313|EMBL:GAL86277.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
nucleotidyltransferase
berkeley_reactor_200306_biofilm_scaffold_70618_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2503..3162
DNA (660bp) protein (220aa)
Metallophosphoesterase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9Z3_NIAKG
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:AEW01337.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_4
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3559..4029
DNA (471bp) protein (157aa)
Ribosome maturation factor RimP n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W8_NIAKG
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Ribosome maturation factor rimP
berkeley_reactor_200306_biofilm_scaffold_70618_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4092..5339
DNA (1248bp) protein (416aa)
NusA antitermination factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W7_NIAKG
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
NusA antitermination factor
berkeley_reactor_200306_biofilm_scaffold_70618_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5506..8388
DNA (2883bp) protein (961aa)
Translation initiation factor IF-2 n=1 Tax=Niabella soli DSM 19437 RepID=H1NR38_9SPHI
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
translation initiation factor IF-2
berkeley_reactor_200306_biofilm_scaffold_70618_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8469..9842
DNA (1374bp) protein (458aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003788883
PpiC-type peptidyl-prolyl cis-trans isomerase
berkeley_reactor_200306_biofilm_scaffold_70618_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10056..11003
DNA (948bp) protein (316aa)
Abortive infection protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NV65_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17717.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_70618_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11062..11934
DNA (873bp) protein (291aa)
Phosphatidate cytidylyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THJ7_NIAKG
phosphatidate cytidylyltransferase
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:AEW02843.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11998..12669
DNA (672bp) protein (224aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphatidylserine decarboxylase related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ2_NIAKG
phosphatidylserine decarboxylase
berkeley_reactor_200306_biofilm_scaffold_70618_11
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

12851..13684
DNA (834bp) protein (278aa)
type II restriction endonuclease n=1 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B331E2
type II restriction enzyme
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
berkeley_reactor_200306_biofilm_scaffold_70618_12
Parcubacteria bacterium GW2011_GWA2_52_8, Parcubacteria, Bacteria

Not on your lists

comp(13685..14980)
DNA (1296bp) protein (432aa)
Methylase N-4/N-6 domain protein {ECO:0000313|EMBL:KKW29100.1}; TaxID=1618857 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_52_8.;"
DNA methylase N-4/N-6 domain protein id=2076573 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
type II DNA modification methylase
berkeley_reactor_200306_biofilm_scaffold_70618_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15181..15876)
DNA (696bp) protein (232aa)
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ3_NIAKG
HAD superfamily hydrolase
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 {ECO:0000313|EMBL:AEW02846.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16041..16742
DNA (702bp) protein (234aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ4_NIAKG
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEW02847.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_15
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16852..17886)
DNA (1035bp) protein (345aa)
Oxidoreductase domain-containing protein id=3832922 bin=GWF2_Bacteroidetes_41_9 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
oxidoreductase domain-containing protein
Tax=GWE2_Bacteroidetes_42_39_curated
berkeley_reactor_200306_biofilm_scaffold_70618_16
unknown

Not on your lists

comp(17963..18814)
DNA (852bp) protein (284aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_70618_17
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18845..19291)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GMR8_9SPHI
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_biofilm_scaffold_70618_18
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19384..21504)
DNA (2121bp) protein (707aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000380A171
Iron transporter FeoB {ECO:0000313|EMBL:KIC90924.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
ferrous iron transport protein B
berkeley_reactor_200306_biofilm_scaffold_70618_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21711..23129
DNA (1419bp) protein (473aa)
Peptidase M28 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF38_NIAKG
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:AEW02658.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23133..23567
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF37_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02657.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23655..23885
DNA (231bp) protein (77aa)
4a-hydroxytetrahydrobiopterin dehydratase {ECO:0000256|SAAS:SAAS00118034}; EC=4.2.1.96 {ECO:0000256|SAAS:SAAS00118034};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF36_NIAKG
pterin-4-alpha-carbinolamine dehydratase
berkeley_reactor_200306_biofilm_scaffold_70618_22
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24055..24669)
DNA (615bp) protein (205aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF71_NIAKG
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase
berkeley_reactor_200306_biofilm_scaffold_70618_23
unknown

Not on your lists

25053..25151
DNA (99bp) protein (33aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_70618_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25207..26472
DNA (1266bp) protein (422aa)
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF72_NIAKG
quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit {ECO:0000313|EMBL:AEW02692.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26579..29731
DNA (3153bp) protein (1051aa)
iron-sulfur binding protein n=1 Tax=Niabella aurantiaca RepID=UPI000380B94E
[Fe-S]-binding protein {ECO:0000313|EMBL:KIC91101.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
iron-sulfur binding oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_70618_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29821..31269
DNA (1449bp) protein (483aa)
Fe-S-cluster-containing hydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI0003690608
quinol:cytochrome c oxidoreductase quinone-binding subunit 1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1 {ECO:0000313|EMBL:AEW02694.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31350..31943
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003736940
Quinol:cytochrome C oxidoreductase {ECO:0000313|EMBL:KIC91103.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_70618_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32023..32640
DNA (618bp) protein (206aa)
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF76_NIAKG
quinol:cytochrome c oxidoreductase monoheme cytochrome subunit
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit {ECO:0000313|EMBL:AEW02696.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_70618_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

32673..33896
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BCB4C
quinol:cytochrome c oxidoreductase quinone-binding subunit 2
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_biofilm_scaffold_70618_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33953..35032
DNA (1080bp) protein (360aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Cytochrome c oxidase subunit 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF78_NIAKG
cytochrome c oxidase subunit II
Displaying items 1-30 of 189 in total

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