ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_149678

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_149678_1
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..169
DNA (168bp) protein (56aa)
mandelate racemase/muconate lactonizing protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628A80
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_biofilm_scaffold_149678_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

476..712
DNA (237bp) protein (79aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUZ0_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KIC95445.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
sigma-70 family RNA polymerase sigma factor
berkeley_reactor_200306_biofilm_scaffold_149678_3
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(980..2071)
DNA (1092bp) protein (364aa)
Peptidase M19 renal dipeptidase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ERM1_EMTOG
peptidase M19 renal dipeptidase
Peptidase M19 renal dipeptidase {ECO:0000313|EMBL:AFK02324.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
berkeley_reactor_200306_biofilm_scaffold_149678_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2083..3081)
DNA (999bp) protein (333aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIM1_SPILD
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ADB39947.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_biofilm_scaffold_149678_5
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3113..3511)
DNA (399bp) protein (133aa)
Ribonuclease UK114 {ECO:0000313|EMBL:CCH54336.1}; EC=3.1.-.- {ECO:0000313|EMBL:CCH54336.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
Ribonuclease UK114 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GKB1_9BACT
endoribonuclease L-PSP
berkeley_reactor_200306_biofilm_scaffold_149678_6
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3624..3794)
DNA (171bp) protein (57aa)
Oxidoreductase domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EMK6_RUNSL
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AEI50977.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Displaying 6 items

View Taxonomy