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berkeley_reactor_200306_biofilm_scaffold_14321

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_14321_1
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(121..684)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QZ86_CHLT3
Uncharacterized protein {ECO:0000313|EMBL:KEO75407.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_14321_2
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(681..917)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003601362
Glyoxalase {ECO:0000313|EMBL:KIF30236.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
glyoxalase/bleomycin resistance protein/dioxygenase
berkeley_reactor_200306_biofilm_scaffold_14321_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

919..1650
DNA (732bp) protein (244aa)
AraC family transcriptional regulator n=1 Tax=Segetibacter koreensis RepID=UPI000367D6E2
transcriptional regulator, AraC family with amidase-like domain
Transcriptional regulator, AraC family with amidase-like domain {ECO:0000313|EMBL:AEW01435.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_14321_4
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1693..2730
DNA (1038bp) protein (346aa)
neuraminidase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B6C770
sialidase
Sialidase {ECO:0000313|EMBL:AKD02288.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
berkeley_reactor_200306_biofilm_scaffold_14321_5
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3136..3564
DNA (429bp) protein (143aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G2E1_ECHVK
response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:AGA79483.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_biofilm_scaffold_14321_6
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3581..3955
DNA (375bp) protein (125aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G2E1_ECHVK
response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:AGA79483.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_biofilm_scaffold_14321_7

Not on your lists

4109..5254
DNA (1146bp) protein (382aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM19163.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
berkeley_reactor_200306_biofilm_scaffold_14321_8
unknown

Not on your lists

comp(5527..5877)
DNA (351bp) protein (117aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_14321_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6777..7058
DNA (282bp) protein (94aa)
10 kDa chaperonin n=1 Tax=Niabella soli DSM 19437 RepID=H1NMV2_9SPHI
molecular chaperone GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_14321_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7111..8739
DNA (1629bp) protein (543aa)
molecular chaperone GroEL n=1 Tax=Segetibacter koreensis RepID=UPI000366B2C7
60 kDa chaperonin
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_14321_11
Streptococcus sp. 2_1_36FAA, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9126..10001)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Streptococcus sp. 2_1_36FAA RepID=D0RXU7_9STRE
Uncharacterized protein {ECO:0000313|EMBL:EEY79300.1}; TaxID=469609 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sp. 2_1_36FAA.;"
YCII-related protein
berkeley_reactor_200306_biofilm_scaffold_14321_12
unknown

Not on your lists

comp(10006..10284)
DNA (279bp) protein (93aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_14321_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10453..10797)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003162826
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF48020.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
berkeley_reactor_200306_biofilm_scaffold_14321_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10824..12188)
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036E0A82
Putative hydrolase {ECO:0000313|EMBL:GAO44450.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_14321_15
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12229..12648)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036E2496
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB37974.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_biofilm_scaffold_14321_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12666..13649)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003666AC2
alpha/beta hydrolase
Putative hydrolase {ECO:0000313|EMBL:GAO41228.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
berkeley_reactor_200306_biofilm_scaffold_14321_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13685..14464)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003653A10
hypothetical protein
Signal peptide protein {ECO:0000313|EMBL:KIC95008.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
berkeley_reactor_200306_biofilm_scaffold_14321_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14485..15303)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCD0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01437.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_14321_19
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15400..15666)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00036D0123
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADR22077.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
berkeley_reactor_200306_biofilm_scaffold_14321_20
unknown

Not on your lists

comp(15684..15920)
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_14321_21
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15927..16682)
DNA (756bp) protein (252aa)
NmrA family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCD2_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44001.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
NmrA family protein
berkeley_reactor_200306_biofilm_scaffold_14321_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16837..19464)
DNA (2628bp) protein (876aa)
Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCD3_NIAKG
Transcriptional regulator, NifA subfamily, Fis Family {ECO:0000313|EMBL:AEW01440.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Fis family NifA subfamily transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_14321_23
unknown

Not on your lists

comp(19509..19772)
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_14321_24
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19894..20403
DNA (510bp) protein (170aa)
ATPase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B776BD
Uncharacterized protein {ECO:0000313|EMBL:GAM08490.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
activator of Hsp90 ATPase 1-like protein
berkeley_reactor_200306_biofilm_scaffold_14321_25
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20472..21011)
DNA (540bp) protein (180aa)
Response regulator receiver protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VMA5_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EPR71325.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
response regulator receiver protein
berkeley_reactor_200306_biofilm_scaffold_14321_26
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21098..21532)
DNA (435bp) protein (145aa)
Response regulator receiver protein n=1 Tax=Flavobacterium sp. F52 RepID=J1KPM7_9FLAO
Response regulator receiver protein {ECO:0000313|EMBL:EJF99760.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
cheY; two-component response regulator, cheY-like
berkeley_reactor_200306_biofilm_scaffold_14321_27
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21564..23510)
DNA (1947bp) protein (649aa)
rcsC; sensor for ctr capsule biosynthesis; sensor histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00035E4651
berkeley_reactor_200306_biofilm_scaffold_14321_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23625..24665)
DNA (1041bp) protein (347aa)
Transcriptional regulator, LacI family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDN3_NIAKG
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AEW01483.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_14321_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24678..26549)
DNA (1872bp) protein (624aa)
Heparinase II/III family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPN1_9SPHI
heparinase II/III family protein
Heparinase II/III family protein {ECO:0000313|EMBL:AHF14965.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_14321_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26561..28615)
DNA (2055bp) protein (685aa)
Parallel beta-helix repeat protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPN0_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14966.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Displaying items 1-30 of 142 in total

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