ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_6339_28

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(33524..34243)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LytTR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA82_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 56.5
  • Coverage: 239.0
  • Bit_score: 288
  • Evalue 5.60e-75
LytTR family two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 56.5
  • Coverage: 239.0
  • Bit_score: 288
  • Evalue 1.60e-75
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEV97029.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.5
  • Coverage: 239.0
  • Bit_score: 288
  • Evalue 7.80e-75

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 720
ATGAACCTGCAGTGCATTATAGTAGATGACGAACCGAGCGCCCGTAAATTGCTGGAGGAATATATCGAGGACATCGATTTCCTCGAGCTGGTGGGAAAAGCGGAGAATCCACTGAAGGCCAATGCCATCCTGAACGCACAGAAAGTGGACCTGATGTTCCTCGACGTGGATATGCCGAAGATGAGCGGCATCGAGTTCCTCCGGTCCATTCCATCATTGCCTCCTGCGATCATGACGACAGCCTATACGGAATACGCTATCCAGGGATTCGAGCTGGATGTGCTGGACTACCTCGTCAAACCCATCTCTTTTGAAAGGTTCCTGAAAGCGTGCAATAAAGCGCGGGAATATTTTGCCGCCATCAGCAGCAGCGGTACCGGCAATACCCCTCCGGCTGACTTTTTCTTTGTAAAATGCGATGGCAAGATCGAGAAAGTATTTCACGAAGAGCTGATCTATGTGGAAGCCATGCTGAACTATGTCGTGCTTCACACGGAGACCAGGAAGCTTATCGTTCATCATACCATCAAGGGGATTGCCGAGCAGCTGCCGGCTCAGCATTTCCTGAAGATCCACAAATCCACCGTCATCAACATCAGCAAGGTGAGGAGCATCGAAGGTAATGAGATCAACCTGGGCAAATCAAAAGTGATCATCAGCCAAAACCTGCAGGAGTCTGTGATCAAGGAGATCATACGGGACAGGATGCTGAAAAGATAG
PROTEIN sequence
Length: 240
MNLQCIIVDDEPSARKLLEEYIEDIDFLELVGKAENPLKANAILNAQKVDLMFLDVDMPKMSGIEFLRSIPSLPPAIMTTAYTEYAIQGFELDVLDYLVKPISFERFLKACNKAREYFAAISSSGTGNTPPADFFFVKCDGKIEKVFHEELIYVEAMLNYVVLHTETRKLIVHHTIKGIAEQLPAQHFLKIHKSTVINISKVRSIEGNEINLGKSKVIISQNLQESVIKEIIRDRMLKR*