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berkeley_reactor_200306_biofilm_scaffold_6339

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Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_6339_1
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

550..1821
DNA (1272bp) protein (424aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VXL4_DESAS
Transposase {ECO:0000313|EMBL:KJS12094.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
RNA-directed DNA polymerase
berkeley_reactor_200306_biofilm_scaffold_6339_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1998..2291)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01513.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2288..3307)
DNA (1020bp) protein (340aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
5'-nucleotidase SurE n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR2_NIAKG
multifunctional protein surE
berkeley_reactor_200306_biofilm_scaffold_6339_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3479..4360
DNA (882bp) protein (294aa)
ATP synthase gamma chain n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR0_NIAKG
ATP synthase F1 subcomplex subunit gamma
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4435..5310
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036AFFB0
chromosome segregation and condensation protein ScpB
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_biofilm_scaffold_6339_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5303..6514
DNA (1212bp) protein (404aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Diaminopimelate decarboxylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NRK7_9SPHI
diaminopimelate decarboxylase
berkeley_reactor_200306_biofilm_scaffold_6339_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6550..7038)
DNA (489bp) protein (163aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQC6_NIAKG
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEW02140.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_8
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7136..8776
DNA (1641bp) protein (547aa)
Peptidase C1A papain n=1 Tax=Niabella soli DSM 19437 RepID=H1NJ92_9SPHI
Peptidase C1 family protein {ECO:0000313|EMBL:GAO44782.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
peptidase C1
berkeley_reactor_200306_biofilm_scaffold_6339_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8781..9278
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ7_NIAKG
Thioesterase {ECO:0000313|EMBL:KIC90695.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6339_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9602..12307
DNA (2706bp) protein (902aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDP9_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01499.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12358..15423)
DNA (3066bp) protein (1022aa)
Serine-aspartate repeat-containing protein D n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GCB8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AEW01498.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6339_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15690..17090
DNA (1401bp) protein (467aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ6_NIAKG
RNA-metabolising metallo-beta-lactamase
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:AEW01506.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_13
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17213..18238
DNA (1026bp) protein (342aa)
Inner membrane protein ypdA n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GET9_9BACT
Inner membrane protein ypdA {ECO:0000313|EMBL:CCH52414.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
signal transduction histidine kinase LytS
berkeley_reactor_200306_biofilm_scaffold_6339_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18264..19637)
DNA (1374bp) protein (458aa)
Phosphoglucosamine mutase {ECO:0000313|EMBL:AEW00701.1}; EC=5.4.2.10 {ECO:0000313|EMBL:AEW00701.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphoglucosamine mutase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI84_NIAKG
phosphoglucosamine mutase
berkeley_reactor_200306_biofilm_scaffold_6339_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19634..20974)
DNA (1341bp) protein (447aa)
Glucose/galactose transporter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPT9_NIAKG
Putative glucose/galactose transporter {ECO:0000313|EMBL:GAO42163.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
glucose/galactose transporter
berkeley_reactor_200306_biofilm_scaffold_6339_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20996..22123)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NJT9_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14106.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_6339_17
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22283..24673
DNA (2391bp) protein (797aa)
peptidase n=1 Tax=Pontibacter roseus RepID=UPI00037555F1
Extracellular metal-dependent peptidase {ECO:0000313|EMBL:EJF08139.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
peptidase
berkeley_reactor_200306_biofilm_scaffold_6339_18
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

24698..25048
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Nostoc sp. PCC 7107 RepID=K9QEL1_9NOSO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY44095.1}; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
berkeley_reactor_200306_biofilm_scaffold_6339_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25358..26662)
DNA (1305bp) protein (435aa)
Major facilitator superfamily MFS_1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIA5_NIAKG
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEW00722.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26702..27325)
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK72_9BACT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEF59710.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_6339_21
Chryseobacterium vrystaatense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27417..27755
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) RepID=G8X4K3_FLACA
Uncharacterized protein {ECO:0000313|EMBL:KFF28119.1}; TaxID=307480 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium vrystaatense.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6339_22
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27752..28099
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC61681.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6339_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28126..29259
DNA (1134bp) protein (378aa)
Glutathionylspermidine synthase {ECO:0000313|EMBL:AEV99553.1}; EC=6.3.1.8 {ECO:0000313|EMBL:AEV99553.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Glutathionylspermidine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGV1_NIAKG
glutathionylspermidine synthase
berkeley_reactor_200306_biofilm_scaffold_6339_24
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29246..30337)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B86B7
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ24364.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6339_25
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30487..31866
DNA (1380bp) protein (460aa)
Amino acid permease-associated region n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGJ0_9SPHI
Amino acid permease-associated region {ECO:0000313|EMBL:EHQ25376.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
amino acid transporter
berkeley_reactor_200306_biofilm_scaffold_6339_26
unknown

Not on your lists

32035..32451
DNA (417bp) protein (139aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6339_27
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32590..33489
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037CFC78
Uncharacterized protein {ECO:0000313|EMBL:EZH74072.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_6339_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33524..34243)
DNA (720bp) protein (240aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA82_NIAKG
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEV97029.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34240..35259)
DNA (1020bp) protein (340aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA81_NIAKG
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEV97028.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_6339_30
unknown

Not on your lists

35348..35437
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying items 1-30 of 114 in total

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