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berkeley_reactor_200306_biofilm_scaffold_101524

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_101524_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

306..803
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000374A746
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ08411.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
berkeley_reactor_200306_biofilm_scaffold_101524_2
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

865..1239
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC53860.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
berkeley_reactor_200306_biofilm_scaffold_101524_3
Psychrobacter cryohalolentis, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1347..2261
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Psychrobacter cryohalolentis (strain K5) RepID=Q1QBE3_PSYCK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE75010.1}; TaxID=335284 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter cryohalolentis (strain K5).;"
berkeley_reactor_200306_biofilm_scaffold_101524_4
unknown

Not on your lists

comp(2084..2437)
DNA (354bp) protein (118aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_101524_5
unknown

Not on your lists

3169..3510
DNA (342bp) protein (114aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_101524_6
unknown

Not on your lists

3832..4608
DNA (777bp) protein (259aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_101524_7
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4454..5362)
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRZ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN70690.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
methyltransferase FkbM domain protein
berkeley_reactor_200306_biofilm_scaffold_101524_8
unknown

Not on your lists

5802..6002
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_101524_trna_1
unknown

Not on your lists

comp(6533..6606)
DNA (74bp)
transferRNA Arg
berkeley_reactor_200306_biofilm_scaffold_101524_9
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6682..7383)
DNA (702bp) protein (234aa)
TIGR02453 family protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KNZ7_MESAW
TIGR02453 family protein
TIGR02453 family protein {ECO:0000313|EMBL:AGB45798.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_101524_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7426..9453)
DNA (2028bp) protein (676aa)
drug:proton antiporter n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B72DCE
Drug:proton antiporter {ECO:0000313|EMBL:KGM35527.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
fdx; ferredoxin, 2Fe-2S iron-sulfur cluster binding domain protein
berkeley_reactor_200306_biofilm_scaffold_101524_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9488..10396)
DNA (909bp) protein (303aa)
Pterin binding enzyme domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RV75_9GAMM
Methyltetrahydrofolate:corrinoid methyltransferase {ECO:0000313|EMBL:KGM35508.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_101524_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10509..11447)
DNA (939bp) protein (313aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase {ECO:0000313|EMBL:ADH90744.1}; EC=1.3.1.12 {ECO:0000313|EMBL:ADH90744.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
cyclohexadienyl dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E2D969
berkeley_reactor_200306_biofilm_scaffold_101524_13
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11563..13272)
DNA (1710bp) protein (570aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X011_9RHIZ
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:GAN52286.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
methyl-accepting chemotaxis sensory transducer
berkeley_reactor_200306_biofilm_scaffold_101524_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13692..14786)
DNA (1095bp) protein (365aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Histidinol-phosphate aminotransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMB4_9RHIZ
histidinol-phosphate aminotransferase
berkeley_reactor_200306_biofilm_scaffold_101524_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14795..15610)
DNA (816bp) protein (272aa)
Chorismate mutase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICB0_XANP2
hypothetical protein
Chorismate mutase {ECO:0000313|EMBL:ABS65653.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_101524_16
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15642..16064)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TNX4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65497.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_101524_17
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16061..17305)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XDC3_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL53879.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
berkeley_reactor_200306_biofilm_scaffold_101524_18
RLO_OP11_Levybacteria_39_17, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(17407..18339)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ED35_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_OP11_Levybacteria_39_17_curated
berkeley_reactor_200306_biofilm_scaffold_101524_19
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18373..18816)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ML2_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG61357.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_101524_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18844..20259)
DNA (1416bp) protein (472aa)
Multicopper oxidase, type 3 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ML3_MESSB
multicopper oxidase, type 3
Multicopper oxidase, type 3 {ECO:0000313|EMBL:ABG61356.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_101524_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20372..20719)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ML4_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG61355.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_101524_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20789..20962)
DNA (174bp) protein (58aa)
membrane protein n=1 Tax=Methyloferula stellata RepID=UPI0003743D04
hypothetical protein
UPF0391 membrane protein Rpal_3821 {ECO:0000256|HAMAP-Rule:MF_01361}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_101524_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21039..21791)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Vibrio vulnificus (strain YJ016) RepID=Q7MQ54_VIBVY
Uncharacterized protein {ECO:0000313|EMBL:KGM34406.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative exported protease
berkeley_reactor_200306_biofilm_scaffold_101524_24
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21839..22684)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036EF3DC
Uncharacterized protein {ECO:0000313|EMBL:KGM30782.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
D-tagatose 3-epimerase
berkeley_reactor_200306_biofilm_scaffold_101524_25
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22858..24225)
DNA (1368bp) protein (456aa)
ABC-1 domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A595_STAND
ABC transporter
ABC-1 domain protein {ECO:0000313|EMBL:ADH89983.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_101524_26
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24382..25707
DNA (1326bp) protein (442aa)
Methyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J2Z7_9RHOB
Methyltransferase {ECO:0000313|EMBL:EJW11110.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
sun protein
berkeley_reactor_200306_biofilm_scaffold_101524_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25780..26736)
DNA (957bp) protein (319aa)
agmatinase (EC:3.5.3.11)
Guanidinobutyrase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHF7_9RHIZ
Agmatinase {ECO:0000313|EMBL:EYR78111.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
berkeley_reactor_200306_biofilm_scaffold_101524_28
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26972..28033
DNA (1062bp) protein (354aa)
Multidrug resistance efflux pump n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1J2_9RHIZ
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIM30084.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_101524_29
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28033..30372
DNA (2340bp) protein (780aa)
Multidrug resistance efflux pump n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1J1_9RHIZ
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIM30083.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
Displaying items 1-30 of 46 in total

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