name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_27699_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..674)
|
Putative 2-ketoarginine decarboxylase AruI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C836_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZO97333.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
|
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berkeley_reactor_200306_biofilm_scaffold_27699_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(696..1415)
|
4-hydroxy-2-oxovalerate aldolase BphF {ECO:0000313|EMBL:EYR84438.1}; EC=4.1.3.39 {ECO:0000313|EMBL:EYR84438.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-hydroxy-2-oxovalerate aldolase BphF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQX9_9RHIZ
aldolase
|
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berkeley_reactor_200306_biofilm_scaffold_27699_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1408..2103)
|
Dimethylmenaquinone methyltransferase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RP28_9RHIZ
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:EYR84439.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dimethylmenaquinone methyltransferase
|
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berkeley_reactor_200306_biofilm_scaffold_27699_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2154..3272)
|
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
ABC transporter nucleotide binding/ATPase protein (Putrescine) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3X4_AGRVS
potG; ABC transporter nucleotide binding/ATPase protein (putrescine)
|
|
berkeley_reactor_200306_biofilm_scaffold_27699_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3285..4313)
|
Putrescine-binding periplasmic protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3X3_AGRVS
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
potF; ABC transporter substrate binding protein (putrescine)
|
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berkeley_reactor_200306_biofilm_scaffold_27699_6
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4339..5199)
|
ABC transporter n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3X2_AGRVS
ABC transporter
ABC transporter {ECO:0000313|EMBL:ACM39627.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
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berkeley_reactor_200306_biofilm_scaffold_27699_7
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5196..6062)
|
ABC transporter membrane spanning protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3X1_AGRVS
potB; ABC transporter permease
ABC transporter membrane spanning protein {ECO:0000313|EMBL:ACM39626.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
|
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berkeley_reactor_200306_biofilm_scaffold_27699_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6062..6748)
|
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES01_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR84444.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_27699_9
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7117..7431
|
10 kDa chaperonin n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U8W9_METS4
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
|
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berkeley_reactor_200306_biofilm_scaffold_27699_10
bacterium YEK0313, Bacteria
|
Not on your lists |
7478..9124
|
60 kDa chaperonin n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBW4_9BRAD
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
groEL; molecular chaperone GroEL
|
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berkeley_reactor_200306_biofilm_scaffold_27699_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9271..9687)
|
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A815_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE96395.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
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berkeley_reactor_200306_biofilm_scaffold_27699_12
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9918..11123)
|
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=883 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).;"
D-alanine--D-alanine ligase n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DLD4_DESVM
|
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berkeley_reactor_200306_biofilm_scaffold_27699_13
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11274..11960
|
cyclic nucleotide-binding protein n=1 Tax=Methyloferula stellata RepID=UPI00036BCF55
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EMS44333.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
cyclic nucleotide-binding protein
|
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berkeley_reactor_200306_biofilm_scaffold_27699_14
bacterium YEK0313, Bacteria
|
Not on your lists |
comp(11964..12575)
|
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IGH2_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:CEJ15509.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_27699_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12581..14254)
|
thiamine pyrophosphate protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FDFEDF
thiamine pyrophosphate protein
Acetolactate synthase large subunit {ECO:0000313|EMBL:BAF90174.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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berkeley_reactor_200306_biofilm_scaffold_27699_16
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14329..15282)
|
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Caulobacter crescentus OR37 RepID=R0D371_CAUCE
conserved protein of unknown function; NAD(P)-binding domain
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ENZ83071.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
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berkeley_reactor_200306_biofilm_scaffold_27699_17
unknown
|
Not on your lists |
15719..15847
|
This feature has no annotations |