name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_116766_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..357)
|
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Afipia birgiae RepID=UPI0002DE3AE5
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_2
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(370..1746)
|
Pyruvate dehydrogenase E1 component, beta subunit n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z7L0_9BRAD
pyruvate dehydrogenase E1 component, beta subunit
Pyruvate dehydrogenase E1 component, beta subunit {ECO:0000313|EMBL:BAM89544.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_3
bacterium YEK0313, Bacteria
|
Not on your lists |
comp(1877..2941)
|
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Pyruvate dehydrogenase alpha subunit n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I4K0_AZOC5
pdhA; pyruvate dehydrogenase subunit alpha
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3195..3512)
|
Putative septum formation initiator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I4J8_AZOC5
septum formation initiator
Putative septum formation initiator {ECO:0000313|EMBL:BAF87738.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3661..4941)
|
enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
enolase n=1 Tax=Xanthobacteraceae RepID=UPI0003707633
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5077..5478)
|
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HP1_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ08543.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_7
unknown
|
Not on your lists |
comp(5689..6213)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_116766_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6446..7483
|
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P358_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41821.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_9
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7494..7955
|
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=alpha proteobacterium L41A RepID=UPI00036E1B46
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_10
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7960..8940
|
Beta-lactamase domain protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELW5_METSB
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACK50746.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8943..9776)
|
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMJ9_9BRAD
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9868..10752)
|
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003600FF2
Uncharacterized protein {ECO:0000313|EMBL:KFC68935.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_13
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10812..11990)
|
Citrate synthase (si) (EC:2.3.3.1)
Citrate synthase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EJ47_9BURK
Excisionase {ECO:0000313|EMBL:KDP88884.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_14
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12084..13505
|
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Acidovorax sp. CF316 RepID=J0KN78_9BURK
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EJE55035.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
CAIB/BAIF family CoA transferase
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_15
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13631..14401)
|
PEP phosphonomutase n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1F8S6_9BURK
phosphoenolpyruvate phosphomutase family protein
Phosphoenolpyruvate phosphomutase family protein {ECO:0000313|EMBL:AIO39834.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_16
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14598..16016)
|
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003725088
phospholipase D/Transphosphatidylase
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:AIQ88336.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16106..16717)
|
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8R3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF86227.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
NAD-dependent epimerase/dehydratase
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16810..17199
|
MarR family transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLU3_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL88184.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
MarR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17222..17431)
|
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
CTP synthase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B6W3_9RHIZ
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17495..18850)
|
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
CTP synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0F9_9RHIZ
pyrG; CTP synthetase
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18959..19348)
|
Preprotein translocase, SecG subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYK3_STAND
preprotein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ADH89115.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_22
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19537..20076)
|
Peptidyl-prolyl cis-trans isomerase cyclophilin type {ECO:0000313|EMBL:AEV37720.1}; EC=5.2.1.8 {ECO:0000313|EMBL:AEV37720.1};; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000300D0FA
cyclophilin type peptidyl-prolyl cis-trans isomerase
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_23
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20124..20624)
|
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
phosphopantetheine adenylyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000307A805
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_24
unknown
|
Not on your lists |
20892..21179
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_116766_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21373..24093)
|
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
DNA gyrase subunit A n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030CA909
DNA gyrase subunit A
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_26
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24520..26529
|
Putative serine protein kinase, PrkA n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11LR6_MESSB
Putative serine protein kinase, PrkA {ECO:0000313|EMBL:ABG61659.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
putative serine protein kinase PrkA
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_27
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26549..27865
|
UPF0229 protein PMI09_03640 n=1 Tax=Rhizobium sp. CF122 RepID=J3BJG8_9RHIZ
UPF0229 protein PMI09_03640 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
UPF0229 protein
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_28
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27862..29406
|
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2I9N3_9RHIZ
ycgB; putative protein ycgB
Uncharacterized protein {ECO:0000313|EMBL:CDM62745.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_29
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29784..30902
|
Secretion protein HlyD family protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8P2_HYPSM
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:CCB63620.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_116766_30
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30899..32512
|
Major facilitator superfamily MFS_1 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8P1_HYPSM
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCB63619.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
|