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berkeley_reactor_200306_biofilm_scaffold_10611_90

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 95967..97166

Top 3 Functional Annotations

Value Algorithm Source
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI0003825D9F similarity UNIREF
DB: UNIREF100
  • Identity: 83.5
  • Coverage: 399.0
  • Bit_score: 688
  • Evalue 2.40e-195
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR81149.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 399.0
  • Bit_score: 683
  • Evalue 1.10e-193
extracellular solute-binding protein similarity KEGG
DB: KEGG
  • Identity: 83.5
  • Coverage: 388.0
  • Bit_score: 675
  • Evalue 5.90e-192

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1200
ATGAGATTGTTGCAGCGACTGGCGGCGGTCTGCGCCCTCGCCGCGAGCCTGGCCGCCGGCCCGGCCGCGGCCGAGACCGTGCGCTTCTGGTACCATTTCGACAATCCCGACAACCCGATGTTGGAGCTGGTGGCCAAGTTCGAGGCTGCCAATCCCGGCATCAAGGTCGAGGCCGAGAACGTCCCCTGGAACAGCTATTACGACAATCTCTACACCGCGATCGTCGGCGGCAATGCGCCCGACGCGGCCATGGTCAAGCTGTTCGCCCAGCCGCGGCTGGTCGAGATGGGCGCGCTGGAGCCGATCGGCGAGCGCATCGACGCCTGGCCGGGCAAGGCCGACCTGCTCGACAACCTGCTGACCCTGAACAAGGGGCCGGACGGCAAGCAGTATTACCTGCCGATCCAATATGTCGTGCTCTACCTCTATTACCGTGCCGACCTGTTCAAGGAGGCCGGCCTCGAGCCGCCGAAGACCTGCGACGAGTTCCGCGCCGCGGCCAAGGCGCTGACCAAGGCGCCGGAGCGCTGGGGCTTCGGCCTGCGCGGCGGCAAGGGCGGCTGGGACCAGTGGGGCACCTTCGTGTTCTCGCGCGGCGCCACGCTCGCGCCCGGCGGCCTGACCACGCCGCAGGCGATCGCCGCCAACCAGTGGCTGATCGACATGTTCCAAAAGGACAAGTCGATCCCGCCCTCGGCACCCAATGACGGCTTCCAGGAGATCATCGGCGCCTTCAAGGCCGGCAAGACGGCGATGACCATCCACCATATCGGCTCCTCCAACGATCTGGTGAAGGCCCTCGGCGACAAGGTCTCGGCCGTGCCCGTGCCGGCCTGCGACGGCCGGGCCTGGACCTCCTACGGCGACGAATCCCTTGCGGTGTTTTCGGCCTCCACGGTCAAGGACGCCGCCTGGAAATGGATCGCCTTCCTGGCCGAGGGCGAGAACAACGTCGCCTTCAACAAGGCGACGGGCCAGATGACCGTGACCAAGAGCGGCGCGGCCCACTGGACGCTGCACCAGCGCCGCTTCGTCGACGCCACGGTGAACTCCCTGCCCTTCGCCGCGGTGCTGCCGCAGAGCACGGCCACGGCCGAGTTCGTCAACACCGCCTGGCCGACGGCGATGCAGCAGGCCCTCACCGGCCAGATCACGTCCGAGGCGATGATGAAGCAGCTCGAAGCGCTGTTCGCGCAGTAG
PROTEIN sequence
Length: 400
MRLLQRLAAVCALAASLAAGPAAAETVRFWYHFDNPDNPMLELVAKFEAANPGIKVEAENVPWNSYYDNLYTAIVGGNAPDAAMVKLFAQPRLVEMGALEPIGERIDAWPGKADLLDNLLTLNKGPDGKQYYLPIQYVVLYLYYRADLFKEAGLEPPKTCDEFRAAAKALTKAPERWGFGLRGGKGGWDQWGTFVFSRGATLAPGGLTTPQAIAANQWLIDMFQKDKSIPPSAPNDGFQEIIGAFKAGKTAMTIHHIGSSNDLVKALGDKVSAVPVPACDGRAWTSYGDESLAVFSASTVKDAAWKWIAFLAEGENNVAFNKATGQMTVTKSGAAHWTLHQRRFVDATVNSLPFAAVLPQSTATAEFVNTAWPTAMQQALTGQITSEAMMKQLEALFAQ*