name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_10611_1
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1..531
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003638189
sugar ABC transporter ATP-binding protein
Sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:BAB50914.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_2
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
528..1493
|
UPI0003CEB0D7 related cluster n=1 Tax=unknown RepID=UPI0003CEB0D7
Putative ribose ABC transporter, permease {ECO:0000313|EMBL:CDX30676.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
sugar ABC transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_3
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1497..2447
|
Putative ribose ABC transporter, permease n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EK84_9RHIZ
Putative ribose ABC transporter, permease {ECO:0000313|EMBL:CDX30679.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
inner-membrane translocator
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2463..3770)
|
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
nicotinate phosphoribosyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036589D8
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4092..5039
|
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dnaN; DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB0DBC
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_6
bacterium YEK0313, Bacteria
|
Not on your lists |
5259..6398
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036BEA96
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
recF; recombination protein F
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_7
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6481..7506
|
Quinone oxidoreductase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q987Z3_RHILO
Putative oxidoreductase YncB {ECO:0000313|EMBL:EYF04626.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
quinone oxidoreductase
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7717..8529
|
transposase IS4 n=1 Tax=Rhizobium RepID=UPI000372292E
Transposase-like protein {ECO:0000313|EMBL:KFC62024.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transposase IS4 family protein
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8551..9402)
|
Blr4580 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89LG4_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ70178.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_10
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9529..10875)
|
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000369CBB6
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AFL53336.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10944..12314)
|
Aminotransferase class-III n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F143_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:CCV09853.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
aminotransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_12
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12311..13462)
|
Uncharacterized conserved protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WAE1_MAGSA
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:BAE49184.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13571..14959)
|
Aminotransferase class-III n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6A8_STAND
class III aminotransferase
Aminotransferase class-III {ECO:0000313|EMBL:ADH88258.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_14
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15164..16969
|
Allophanate hydrolase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZAH0_METPB
allophanate hydrolase
Allophanate hydrolase {ECO:0000313|EMBL:ACB82026.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16969..17628
|
GntR family transcriptional regulator n=2 Tax=Xanthobacteraceae RepID=UPI00036C178B
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH89125.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_16
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17932..19038
|
ABC transporter substrate-binding protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWR9_POLGS
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJV11134.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
ABC transporter substrate-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19118..20221
|
Probable sugar ABC transporter, permease protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWR8_POLGS
ABC transporter permease {ECO:0000313|EMBL:KFL32663.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sugar ABC transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20226..21143
|
Simple sugar transport system permease protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWR7_POLGS
ABC transporter permease {ECO:0000313|EMBL:KKB09631.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Simple sugar transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21153..21875
|
cysteine hydrolase falmily protein (EC:3.5.1.19)
Cysteine hydrolase falmily protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPA6_HERSS
Cysteine hydrolase {ECO:0000313|EMBL:KKB09633.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_20
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22180..23715
|
Predicted ABC-type uncharacterized transport system, ATPase component n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWR4_POLGS
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL32660.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter ATPase
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23717..24397
|
Isochorismatase hydrolase n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2L8Q8_BURGS
Cysteine hydrolase {ECO:0000313|EMBL:KFL32659.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
isochorismatase hydrolase
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_22
unknown
|
Not on your lists |
24394..24597
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_10611_23
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24594..25988
|
amidase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036E99D4
Amidase {ECO:0000313|EMBL:GAN48939.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
amidase
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_24
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26040..27143
|
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VNA4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ19140.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_trna_1
unknown
|
Not on your lists |
27269..27340
|
transferRNA Cys
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27349..28173)
|
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ACL59825.1}; EC=2.7.4.7 {ECO:0000313|EMBL:ACL59825.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Phosphomethylpyrimidine kinase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHD3_METNO
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28170..29357)
|
Thiazole synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4N3_STAND
thiazole biosynthesis protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_27
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29359..29556)
|
Thiamine biosynthesis protein ThiS n=232 Tax=Brucella RepID=A5VNE5_BRUO2
Uncharacterized protein {ECO:0000313|EMBL:KKC34067.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
thiS; thiamine biosynthesis protein ThiS
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_28
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29525..30523)
|
Glycine oxidase ThiO n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z3X9_9RHIZ
Thiamine biosynthesis protein thio {ECO:0000313|EMBL:KFL29707.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
unnamed protein product
|
|
berkeley_reactor_200306_biofilm_scaffold_10611_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30529..32382)
|
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphomethylpyrimidine synthase n=1 Tax=Methylopila sp. M107 RepID=UPI00036E1A1F
thiamine biosynthesis protein ThiC
|