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berkeley_reactor_200306_biofilm_scaffold_10611

Search features with annotation key words

Displaying items 31-60 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_10611_30
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32664..33068)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000360817B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL73986.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_31
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33701..33982
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000369A96E
Transposase {ECO:0000313|EMBL:EYR78222.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transposase of unassigned insertion sequence
berkeley_reactor_200306_biofilm_scaffold_10611_32
unknown

Not on your lists

comp(34191..34397)
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10611_33
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34433..35194)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZNA8_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM87705.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
berkeley_reactor_200306_biofilm_scaffold_10611_34
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36205..37098
DNA (894bp) protein (298aa)
transposase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037BDAF4
transposase
Putative transposase {ECO:0000313|EMBL:ABE61106.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
berkeley_reactor_200306_biofilm_scaffold_10611_35
unknown

Not on your lists

comp(37095..37475)
DNA (381bp) protein (127aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10611_36
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

comp(37472..38050)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035CDEF1
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
berkeley_reactor_200306_biofilm_scaffold_10611_37
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38203..38637)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003664198
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59547.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
berkeley_reactor_200306_biofilm_scaffold_10611_38
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38757..40079)
DNA (1323bp) protein (441aa)
4-aminobutyrate aminotransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037851FE
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KJC41114.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
class III aminotransferase
berkeley_reactor_200306_biofilm_scaffold_10611_39
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40441..41262
DNA (822bp) protein (274aa)
DeoR faimly transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DF468C
DeoR family transcriptional regulatory protein
DeoR family transcriptional regulatory protein {ECO:0000313|EMBL:BAL77764.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_40
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41295..42290
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D50B96
transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAL77765.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_41
bacterium YEK0313, Bacteria

Not on your lists

42368..43204
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003743DDE
HTH-type transcriptional regulator GadX {ECO:0000313|EMBL:CEJ11316.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_10611_42
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43326..43481
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2LGZ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ92436.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
Hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10611_43
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43485..44351
DNA (867bp) protein (289aa)
putative hydrolase (EC:3.3.2.10)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003707AD6
Hydrolase {ECO:0000313|EMBL:EYR65627.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
berkeley_reactor_200306_biofilm_scaffold_10611_44
unknown

Not on your lists

44466..44657
DNA (192bp) protein (64aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10611_45
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44684..45133)
DNA (450bp) protein (150aa)
NUDIX hydrolase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U010_9RHOB
NUDIX hydrolase {ECO:0000313|EMBL:EAQ02641.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
NUDIX hydrolase
berkeley_reactor_200306_biofilm_scaffold_10611_46
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45130..45336)
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Acidithiobacillus caldus RepID=F9ZUX5_ACICS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA00178.1}; TaxID=33059 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus.;"
berkeley_reactor_200306_biofilm_scaffold_10611_47
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45401..46351)
DNA (951bp) protein (317aa)
Choline/ethanolamine kinase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GAI0_9BRAD
choline/ethanolamine kinase
Choline/ethanolamine kinase {ECO:0000313|EMBL:BAL77767.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_48
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46348..47304)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GAI1_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL77768.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_49
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47631..49031
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000380AB13
Amidase {ECO:0000313|EMBL:KJC60949.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
putative amidase
berkeley_reactor_200306_biofilm_scaffold_10611_50
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49034..50266
DNA (1233bp) protein (411aa)
Putative N-carbamoyl-beta-alanine amidohydrolase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GAH5_9BRAD
N-carbamoyl-beta-alanine amidohydrolase {ECO:0000313|EMBL:KJC60956.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
putative N-carbamoyl-beta-alanine amidohydrolase
berkeley_reactor_200306_biofilm_scaffold_10611_51
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50372..52189)
DNA (1818bp) protein (606aa)
Putative substrate-binding component of ABC transporter n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GAI7_9BRAD
putative substrate-binding component of ABC transporter
Putative substrate-binding component of ABC transporter {ECO:0000313|EMBL:BAL77774.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_52
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52191..53099)
DNA (909bp) protein (303aa)
peptide ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030347FD
Peptide ABC transporter permease {ECO:0000313|EMBL:KJC41027.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_10611_53
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53102..54082)
DNA (981bp) protein (327aa)
peptide ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI000376F137
Peptide ABC transporter permease {ECO:0000313|EMBL:KJC41028.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_10611_54
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54151..55692)
DNA (1542bp) protein (514aa)
Putative component of ABC transporter n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GAJ0_9BRAD
putative component of ABC transporter
Putative component of ABC transporter {ECO:0000313|EMBL:BAL77777.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_10611_55
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55913..56716)
DNA (804bp) protein (268aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIU7_XANP2
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABS67940.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_10611_56
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56733..57800)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036F220D
Putative dehydrogenase {ECO:0000313|EMBL:KFC69598.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_10611_57
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57809..58549)
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K91_MESSB
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABG62184.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
berkeley_reactor_200306_biofilm_scaffold_10611_58
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58610..59917)
DNA (1308bp) protein (436aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BT6_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KDR86596.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_10611_59
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59965..60810)
DNA (846bp) protein (282aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BT4_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KDR86597.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
binding-protein-dependent transport system inner membrane protein
Displaying items 31-60 of 102 in total

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