ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_10611_58

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(58610..59917)

Top 3 Functional Annotations

Value Algorithm Source
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BT6_MESSB similarity UNIREF
DB: UNIREF100
  • Identity: 34.7
  • Coverage: 424.0
  • Bit_score: 235
  • Evalue 1.00e-58
Uncharacterized protein {ECO:0000313|EMBL:KDR86596.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.7
  • Coverage: 425.0
  • Bit_score: 412
  • Evalue 6.50e-112
extracellular solute-binding protein similarity KEGG
DB: KEGG
  • Identity: 34.7
  • Coverage: 424.0
  • Bit_score: 235
  • Evalue 2.90e-59

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1308
ATGTCTGGCATGGAAAGACCGGCACGCCTGGGCCTTGCCCTGGCGGCGGGGCTGGCCGTCGCCCTCGCCGGCGGCGCCGGCGCGCAGGAGGCCGGCAAGGTCGAGATCGTCTACGCCACCTTCCTCGACCCGACCAACACCAAGGATCCGCGCGCCGCGGCCCAGAGCCGCATGGTCGAGGCCTTCGAGAAGGCCAATCCCGGCATCACGGTGCGGGTGGAGGTCGATTCCAACCAGCAGGCCAGCATGCGTGCCTTGCGCAGCCGGGCCGGCAGCCCGGACGTGTTCCGGGTCAACAACTTCAACGCCCCGGAATTCGTCGCGACCGGCTCCGTGCTGCCGCTCGACGATCTCATCGCCCGCGACAAGGTCGACATGAAGGACTGGCTGCTCCCGCTGGACGCGGCCAAGATCGACGGCAAGCTCTACGGCATGCAGCAGGATTTCCGCATCCCGATCCTGATCTACCGCAAGAGCCTGCTGGAGAAGGCCGGCGTCACCCCGCCGCGCACCTTCGAGGAGGTCTGCGAGGCCGGCGGCAAGCTCAGCAAGCTCGGCACCGTCATCGGCTATGCCGTGCCGCTCGGCACCAGCGGCGGCCTCGGCGGCGCCCAGCCCCTGGCCGAGAACATGTTCTCCTCGATGGCCACCGAGACGACCGGGCACTATTTCGCCGCGGACGGCAAGGCCATGACCATCGATCCCGACCAGCTCCTCAAGACGCTGCGCACCATCAAGGATCTCTACGGCAAGTGCGGCGCCACGCCGAAGGCCAGCGTCCAGTTCGGCTACAACGAGGTGCATGACGGCCTGCGCGCCGGCAACGTCGCCATGGCCACCTACGGCCTGTTCCGCTTCCGGGCGATCCAGCAGGGCGGCGCGGGCGAGGATCTGGCCTGGGCGCCGCCGCCGGCCTTCGCCCCCGACGGCAAGATGGCTGCCTACGGCTACACCGTCGCGGTCAACGCCAACACGGCGCAGAAGGAGGCCGCCTGGCAGTTCGTCAAGTTCATGGGCAGCCCCGAGGCCCAGGCCATCGCGGCCGAGGGCGGCGAGGTGGTGGCGCGCGCCTCGGTCTACGAGAACGCCCCGCTGTTCAAGACCCCGGACGGCCAGCGCCAGAAGGAATGGGCCCAGCTCATCGCCAGCCGCGGCCAGTTCCTGTCCTATTCCATCGCGCTCACCGCCTTCCACCAGGTCATCGGCGACGCGGCGCAGCGCATGGTGCTGCGCGACATGTCGCCCGAGGACGCCCGGAGCGCGATCGAGAAGGGCTACAAGGACGCCCTAGCCAAGGCCACCCGCTGA
PROTEIN sequence
Length: 436
MSGMERPARLGLALAAGLAVALAGGAGAQEAGKVEIVYATFLDPTNTKDPRAAAQSRMVEAFEKANPGITVRVEVDSNQQASMRALRSRAGSPDVFRVNNFNAPEFVATGSVLPLDDLIARDKVDMKDWLLPLDAAKIDGKLYGMQQDFRIPILIYRKSLLEKAGVTPPRTFEEVCEAGGKLSKLGTVIGYAVPLGTSGGLGGAQPLAENMFSSMATETTGHYFAADGKAMTIDPDQLLKTLRTIKDLYGKCGATPKASVQFGYNEVHDGLRAGNVAMATYGLFRFRAIQQGGAGEDLAWAPPPAFAPDGKMAAYGYTVAVNANTAQKEAAWQFVKFMGSPEAQAIAAEGGEVVARASVYENAPLFKTPDGQRQKEWAQLIASRGQFLSYSIALTAFHQVIGDAAQRMVLRDMSPEDARSAIEKGYKDALAKATR*