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berkeley_reactor_200306_biofilm_scaffold_10611

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Displaying items 61-90 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_10611_60
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60820..61698)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Arthrobacter sp. 161MFSha2.1 RepID=UPI0003757072
Uncharacterized protein {ECO:0000313|EMBL:KDR86598.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_10611_61
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61823..62650)
DNA (828bp) protein (276aa)
UPI0003CF76C5 related cluster n=1 Tax=unknown RepID=UPI0003CF76C5
Uncharacterized protein {ECO:0000313|EMBL:ESX84285.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
iclR; transcriptional regulator, IclR family
berkeley_reactor_200306_biofilm_scaffold_10611_62
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

62745..63515
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003627C1A
3-oxoacyl-(acyl-carrier-protein) reductase
Tax=GWA2_Rokubacteria_73_35_curated
berkeley_reactor_200306_biofilm_scaffold_10611_63
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63548..64549
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003654B32
Uncharacterized protein {ECO:0000313|EMBL:KDR86600.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_10611_64
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64546..65280
DNA (735bp) protein (245aa)
hydratase/decarboxylase family protein (EC:4.2.1.-)
Hydratase/decarboxylase family protein {ECO:0000313|EMBL:AFL50707.1}; EC=4.2.1.- {ECO:0000313|EMBL:AFL50707.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003094FA4
berkeley_reactor_200306_biofilm_scaffold_10611_65
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65327..66022
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LEL2_AGRSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY66016.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
berkeley_reactor_200306_biofilm_scaffold_10611_66
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66167..66421
DNA (255bp) protein (85aa)
SpoVT/AbrB domain-containing protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IYI1_9GAMM
SpoVT/AbrB domain-containing protein {ECO:0000313|EMBL:EGW21203.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
transcriptional regulator/antitoxin, MazE
berkeley_reactor_200306_biofilm_scaffold_10611_67
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66723..70079
DNA (3357bp) protein (1119aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
CRISPR-associated protein, Csn1 family n=1 Tax=Rhodovulum sp. PH10 RepID=J6LE60_9RHOB
CRISPR-associated protein
berkeley_reactor_200306_biofilm_scaffold_10611_68
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70199..71125
DNA (927bp) protein (309aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Rhodovulum sp. PH10 RepID=J5PL26_9RHOB
crispr-associated protein cas1
berkeley_reactor_200306_biofilm_scaffold_10611_69
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71125..71466
DNA (342bp) protein (114aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NT07_AZOS1
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10611_70
unknown

Not on your lists

comp(72236..72760)
DNA (525bp) protein (175aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10611_71
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72918..73223
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBX8_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV12053.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_10611_72
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73223..73606
DNA (384bp) protein (128aa)
Transcriptional regulator, XRE family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AYN5_PARDP
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABL68379.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
berkeley_reactor_200306_biofilm_scaffold_10611_73
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73665..76091)
DNA (2427bp) protein (809aa)
Dimethylglycine dehydrogenase {ECO:0000313|EMBL:EYR80876.1}; EC=1.5.8.4 {ECO:0000313|EMBL:EYR80876.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sarcosine dehydrogenase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NN72_9RHOB
dimethylglycine dehydrogenase precursor
berkeley_reactor_200306_biofilm_scaffold_10611_74
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76306..77481)
DNA (1176bp) protein (392aa)
Major facilitator superfamily MFS_1 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0B3_LEPCP
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACB36592.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
berkeley_reactor_200306_biofilm_scaffold_10611_75
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77982..79535)
DNA (1554bp) protein (518aa)
methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031FEAE2
trimethylamine:corrinoid methyltransferase
Trimethylamine:corrinoid methyltransferase {ECO:0000313|EMBL:AGB46026.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_10611_76
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79709..80866
DNA (1158bp) protein (386aa)
Alcohol dehydrogenase, class IV n=1 Tax=Rhizobium sp. AP16 RepID=J2DCL2_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:KGD87561.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
iron alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_10611_77
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80895..82397
DNA (1503bp) protein (501aa)
Aldehyde dehydrogenase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JBZ1_AGRRK
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGD87562.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
dhaL; aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_10611_78
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82750..83859
DNA (1110bp) protein (370aa)
Enolase superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0H0_9RHIZ
Enolase superfamily protein {ECO:0000313|EMBL:EYR79732.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mandelate racemase/muconate lactonizing enzyme
berkeley_reactor_200306_biofilm_scaffold_10611_79
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83869..84642)
DNA (774bp) protein (258aa)
amino acid ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI0003812FC6
amino acid ABC transporter
Amino acid ABC transporter {ECO:0000313|EMBL:ACM28929.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
berkeley_reactor_200306_biofilm_scaffold_10611_80
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84711..85622)
DNA (912bp) protein (304aa)
membrane protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036CA5FB
putative permease
Putative permease {ECO:0000313|EMBL:CDM61548.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_10611_81
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85789..86727
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002377E3F
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIY40585.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
berkeley_reactor_200306_biofilm_scaffold_10611_82
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86752..87915
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F4F5A2
Putative transport transmembrane protein {ECO:0000313|EMBL:ESR22898.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
major facilitator superfamily protein
berkeley_reactor_200306_biofilm_scaffold_10611_83
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88423..89409
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C38E0
Uncharacterized protein {ECO:0000313|EMBL:KJB96689.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ribose ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_10611_84
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89473..91386
DNA (1914bp) protein (638aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003654512
Uncharacterized protein {ECO:0000313|EMBL:KJB96690.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_10611_85
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91398..92396
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368E004
Uncharacterized protein {ECO:0000313|EMBL:KJB96691.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ABC-type transporter, integral membrane subunit
berkeley_reactor_200306_biofilm_scaffold_10611_86
Enterorhabdus caecimuris, Enterorhabdus, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(92468..93040)
DNA (573bp) protein (191aa)
GG17156 n=1 Tax=Drosophila erecta RepID=B3P1G0_DROER
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EOS49847.1}; TaxID=1235794 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Enterorhabdus.;" source="Enterorhabdus caecimuris B7.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10611_87
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93137..94219)
DNA (1083bp) protein (361aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:EYR81152.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR81152.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037930BF
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_10611_88
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94301..94990
DNA (690bp) protein (230aa)
GntR family transcriptional regulator n=1 Tax=Sinorhizobium medicae RepID=UPI00036E0DB3
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABR59043.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_10611_89
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94987..95931
DNA (945bp) protein (315aa)
alpha/beta hydrolase n=1 Tax=Sinorhizobium medicae RepID=UPI000373E983
alpha/beta hydrolase domain-containing protein
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ABR59044.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying items 61-90 of 102 in total

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