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berkeley_reactor_200306_biofilm_scaffold_10611_81

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 85789..86727

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002377E3F similarity UNIREF
DB: UNIREF100
  • Identity: 56.5
  • Coverage: 299.0
  • Bit_score: 327
  • Evalue 1.40e-86
Transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 57.0
  • Coverage: 300.0
  • Bit_score: 328
  • Evalue 1.10e-87
Transcriptional regulator {ECO:0000313|EMBL:AIY40585.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.0
  • Coverage: 300.0
  • Bit_score: 328
  • Evalue 5.20e-87

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Taxonomy

Collimonas arenae → Collimonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 939
ATGGACCGACGCTGGCTGCCGCTGAACGCCCTGCGTGCCTTCGAGGCGGTGGGCCGCCATGGCAGCTTCACCGCCGCGGCGCAGAGCCTCCTGGTGTCGCAGAGCGCCGTCAGCCGCCACGTCATCGGCCTGGAGGAGTTCCTCGGCGTCGCCCTGTTCGACCGCAAGCCGCAGCAGCCGGTGCTGACCGAGGCCGGCCGCCGCCTGCTGCCGGTGGTGGAGAAGGCGCTCGACCGCATCGACGGCACGCTGGAGGAGATCCTGCGCGAGCGCGGCAAGCCACGCCGCTCCCTGCGCGTGCTGCTGCCGACCACCTTCGCCCAGCGCCTCGCCGTGCCGTTGCTGCGCGACTTCCGCGCCGAGTTCCCCGACGTGACGCTCGACATCGATTCGCGCCCGGTGCCCGGCAGCGCCGAGCGCGAGGTCGACGTCGCCGTGGTCTATTCGCCGCCGCGCGTCGCCCCGCAGGTGCTCGACCTCCTGTGGATGGTGCGCCTCACCGTCCTGTGCCACCCCGCCGTGGCCGCACGGGGACCGGCATCGGACGTGGCCGCCTTCGTCGCCGCGAACGATCTGCTGCACGTCAAGGTCGAGGGGCGCTCGCAGCGCTTCCTGTGGGAGACGTTCGCCCGCACGGTCGGCCTGTCCCCGGCGCAGGTCGACCGGGGCCTAGTCTTCGACACCGCGCAGCTCGCCGCGCAATACGCGCTGTCGGGCGAAGGCATCGCCCTGGTCGATCCCGTGCTGTTCCAGGACGACATCGCCGCCGGACGCCTGGCGCGGCCTTTCGACATCGACGTGGACGACGGCTACGGCTATTACCTCGCCATCCATCCCGACGATCTCGACCGGCCCGAGATCGCCCTGTTCCGCACCTGGCTGATCCGCCGTTTCTCCCGCCCCTTCGCCCTGCCCGACGCGCAGCCAAAAACACGCTGA
PROTEIN sequence
Length: 313
MDRRWLPLNALRAFEAVGRHGSFTAAAQSLLVSQSAVSRHVIGLEEFLGVALFDRKPQQPVLTEAGRRLLPVVEKALDRIDGTLEEILRERGKPRRSLRVLLPTTFAQRLAVPLLRDFRAEFPDVTLDIDSRPVPGSAEREVDVAVVYSPPRVAPQVLDLLWMVRLTVLCHPAVAARGPASDVAAFVAANDLLHVKVEGRSQRFLWETFARTVGLSPAQVDRGLVFDTAQLAAQYALSGEGIALVDPVLFQDDIAAGRLARPFDIDVDDGYGYYLAIHPDDLDRPEIALFRTWLIRRFSRPFALPDAQPKTR*