ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_10611_74

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(76306..77481)

Top 3 Functional Annotations

Value Algorithm Source
Major facilitator superfamily MFS_1 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0B3_LEPCP similarity UNIREF
DB: UNIREF100
  • Identity: 39.8
  • Coverage: 392.0
  • Bit_score: 248
  • Evalue 1.00e-62
major facilitator transporter similarity KEGG
DB: KEGG
  • Identity: 39.8
  • Coverage: 392.0
  • Bit_score: 248
  • Evalue 3.00e-63
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACB36592.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.8
  • Coverage: 392.0
  • Bit_score: 248
  • Evalue 1.50e-62

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Leptothrix cholodnii → Leptothrix → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1176
ATGTCGCTCGTCCTCGAATCCCCGTCCCGTGCGCTGGCCTCCGGCGCGCATCCGGCCATCTTTGTCACCTTCCTGGCCTTCGGCGCCGCAACGGGCCTGTGGGGCGGCTCGCTGCCGGAAGTGGTGCGCCAGGCCGGCGTGACCCCGCGCCTGCTCGGTGCCGCGCTCACGGTCTTCATGCTGGCCTATATCGTCAGCATGTCGTCGGGCGGGTGGCTGGCACGGCGGGTGTCGCTGAAGCGCATCCTGCTGGTCAGCCTGCCGGCGCAGGGCCTCGCCCTGGCGGCGTTGCTGCAAGCGCCTTCGGCCCAGCTCTTCTTCGCCGCCTTCGCCGTCTTCGGTCTGATCACCGGCCTGATCGACCTGGTCATGAACGCCGAAGGCACGCGGGTGGAGGCAGACAAGGGCCGTCCGATCCTGGCCGGGCTGCATGGCGGAGCCTCGCTCGGCATGGCGATCGGCGCCCTCTCGGGCGGCTGGCTCGCGGCCAATCTCGGGACCTGGGCGGTCTCGATGCTGGGTGCGGCCCTGTTCGCCCTGGCGGTCTTGATGCTCGCGACCGGCACGCCGGACCGCGGCATCGACCCGCCGCGCGGCGTGCAGGCGGCCGGGGGCGGCGGACGCCTGATCCTGGCGCTGCTGGGCGTGGTCGTCGGCATTTCCATGGCGGGCGAGATGACGGCGTCGGCCTGGTCGGCGCCGCTTCTGATCGAGCAGGCGCCGGACTTCGCCGCCTGGGCCGGGACCGGGGCGGCTGTGTTCGCGCTGGCCCAGGCCCTGATCCGCTTCCAGGCCGACCCGCTGCGCCGGCGCTTCGGCGACCCGCTGCTCCTGGTGCTGTCGCTGGCGGTGGCCCTGGTGGGCCTGGCCATCGTCACCGTCAGCCCGACCTTCGCCGTCAGCGCCGCCGGCTTCGGCCTGATCGGCCTCGGCACCGCCTGCGTGGTGCCCTGCGGCTTCGCCACGGCCGTCGCCCGCTCGCCGCTGGCACCCTCCGCCTCGCTCGCCCTGGTCGCCTTCGCCTCGGCGCTGCCGCGCCTGCCCACCCCCTATCTCGTCGGCGAGATCGTGACGCGCGCCTCGATCGGCGCCGCCTTCGGCATGTTCGCGGCGCTGTTCCTGGTGGCGATCGGCATCGGCCTCAGCCTGCGGCGCAAGGAGCCGGCCGGGGCCTGA
PROTEIN sequence
Length: 392
MSLVLESPSRALASGAHPAIFVTFLAFGAATGLWGGSLPEVVRQAGVTPRLLGAALTVFMLAYIVSMSSGGWLARRVSLKRILLVSLPAQGLALAALLQAPSAQLFFAAFAVFGLITGLIDLVMNAEGTRVEADKGRPILAGLHGGASLGMAIGALSGGWLAANLGTWAVSMLGAALFALAVLMLATGTPDRGIDPPRGVQAAGGGGRLILALLGVVVGISMAGEMTASAWSAPLLIEQAPDFAAWAGTGAAVFALAQALIRFQADPLRRRFGDPLLLVLSLAVALVGLAIVTVSPTFAVSAAGFGLIGLGTACVVPCGFATAVARSPLAPSASLALVAFASALPRLPTPYLVGEIVTRASIGAAFGMFAALFLVAIGIGLSLRRKEPAGA*