ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_12255_102

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 105239..106027

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036F0483 similarity UNIREF
DB: UNIREF100
  • Identity: 80.1
  • Coverage: 251.0
  • Bit_score: 402
  • Evalue 2.90e-109
ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 77.4
  • Coverage: 261.0
  • Bit_score: 412
  • Evalue 6.10e-113
Hydroxymethylpyrimidine ABC transporter, transmembrane component {ECO:0000313|EMBL:AHK05021.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.4
  • Coverage: 261.0
  • Bit_score: 412
  • Evalue 3.00e-112

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 789
ATGTCCTTCGCCCGCATCCCGGCCCGTGTGCGCGAGCGGCTCTCATCGGCCGCGCTGATCGCCGCGATCTTCCTGGCCTGGGAGGTCGCCTGCCTGGTCTTCCACGTCAGCCCGATCGTGCTGCCCCGCCCGAGCCAGGTGGTGGCGACGCTGGTCATGCAGATGCCGGCGCTGTGGCCGCACATCCTGCAGACCCTGCTCACCACCCTGGTGGGGTTTGCGGCGGGAACGGCGATCGGCGTGCTGCTCGGCGCGATCGTCGGGGTATCGCGCACGGCCTACAACGCTGCCTATCCGCTGCTGGTGGGCTTCTCCTCGATCCCCAAGGTCGCGGTGGTCCCCGTGTTCGTGCTGTGGTTCGGCTCCGGCACCATCCCGGCCGTGCTGACGGCCATGACCACCTGCATCTTCCCGATCGTGGTCAACGTCGCCACGGGCCTGGCCACCACGGAACCGGAGATGGAGGACGTGCTCAGGGCGCTCGGCGCCAGCCGCCGCCAGGTGCTCTGGAATGTCGGCCTGCCCCGCGCCCTGCCCTATTTCTTCGCCTCGCTCAAGGTCGCCGTCACCCTCGCCTTCGTCGGCACCGTGCTCTCCGAGACGGTGGCGGCCAATCTCGGCATCGGCACCGTGATGATGATGGCGAGCGCCAATTTCGACATGCCGCTGGTCTTCGCCGGGCTGTTCGCGCTCGCCGGCCTCGGCATCGCGCTCTACGCGGTGTTCGCCGTCATCGAACGGCGGATGTGCGGCTGGGCCAGCCGCAAGACCGACTTCGCCGTGGGATGA
PROTEIN sequence
Length: 263
MSFARIPARVRERLSSAALIAAIFLAWEVACLVFHVSPIVLPRPSQVVATLVMQMPALWPHILQTLLTTLVGFAAGTAIGVLLGAIVGVSRTAYNAAYPLLVGFSSIPKVAVVPVFVLWFGSGTIPAVLTAMTTCIFPIVVNVATGLATTEPEMEDVLRALGASRRQVLWNVGLPRALPYFFASLKVAVTLAFVGTVLSETVAANLGIGTVMMMASANFDMPLVFAGLFALAGLGIALYAVFAVIERRMCGWASRKTDFAVG*