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berkeley_reactor_200306_biofilm_scaffold_12255_151

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(158411..159481)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 factor n=1 Tax=Rhizobium loti RepID=UPI00035E67E1 similarity UNIREF
DB: UNIREF100
  • Identity: 85.1
  • Coverage: 335.0
  • Bit_score: 567
  • Evalue 5.40e-159
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:AID31608.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.2
  • Coverage: 330.0
  • Bit_score: 561
  • Evalue 7.10e-157
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 70.6
  • Coverage: 333.0
  • Bit_score: 466
  • Evalue 6.30e-129

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Taxonomy

Mesorhizobium huakuii → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1071
GTGGCGGGAGTGAAGCCGGCAAGAACGGACCTGATGTCGAGGGCGCAAGCCGGCGATGGCGAGGCATTCAGAGCCCTGACCGAGCCTCACCGTCGCGAACTCCAGGTGCACTGCTACCGGATGCTCGGATCGTTTCAGGATGCCGAGGACGCGCTGCAGGACGCGATGCTGGCCGCTTGGCGAGGTCTCGAACAATTCGACGGGCGCGCGTCACTGCGCACCTGGCTCTACCGCATAGCCACCAACCGGTGCCTCGATGCGCTACGCTCTGCTCGCCGACGTCCTGCAAAGCAGTGGGACGTCCCGGGACTCGAACCGCCGGAGCCCACTGGACTCGGCGAAATCCACTGGCTCGAGCCCTATCCCGACGGCCTTCTGGACGGTGCGATCAGCGTGCCGCTCGGTCCGGAGGCGCGCTACGAGCAAACCGAATCCATTTCCCTGGCCTTTGTGACCGCCCTGCAGCTCTTGCCGCCCCGCCAACTCGCCGTCCTCATCCTCCGCGACGTCCTCGGATTCCACGCGAACGAAGTGGCGGACATGCTGGACACGACCGTCGAATCGGTCAAAAGCGCTCTCAAACGTGCGCGTGCGGGAATGCAGGGCCGACTGCCGGCAGCCGACGCCTCAGCACAGCCGCCTGATAGCGCCTCACCTGCCGAGGACGCGATCGTGGCGAAGTTCGTCAGCGCCTACGAATCTGCCGACATCGACGCGTTGGTGGCTCTGCTGACCGACGACGTCTTCCTGTCGATGCCGCCGATACCGCTTGAATACCACGGCCGAGACAGCGTGGCCCGCTTCTTCGCATTCATGTTCGGCTCGGTACGGAGATACCAGCTGGTGCCGACGCGAGCCAACGGTCAGCCGGCATTCGGGGTCTACCGACAGACCCCCGCCGGCATCCGGGGAGTAGGCCTCCTCGTCCTCACCCTCTCCGGCGACCGAATCCGCGCCATGATCCGCTTCGAAAACACTTTCCTCCCCATACTCGGCCTGCCGCAATCCCTCCCGAGTGCACAGCAGACCGCCTTCGCCCGCACCGACGACGCACCCCAACGGGGATCATGA
PROTEIN sequence
Length: 357
VAGVKPARTDLMSRAQAGDGEAFRALTEPHRRELQVHCYRMLGSFQDAEDALQDAMLAAWRGLEQFDGRASLRTWLYRIATNRCLDALRSARRRPAKQWDVPGLEPPEPTGLGEIHWLEPYPDGLLDGAISVPLGPEARYEQTESISLAFVTALQLLPPRQLAVLILRDVLGFHANEVADMLDTTVESVKSALKRARAGMQGRLPAADASAQPPDSASPAEDAIVAKFVSAYESADIDALVALLTDDVFLSMPPIPLEYHGRDSVARFFAFMFGSVRRYQLVPTRANGQPAFGVYRQTPAGIRGVGLLVLTLSGDRIRAMIRFENTFLPILGLPQSLPSAQQTAFARTDDAPQRGS*