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berkeley_reactor_200306_biofilm_scaffold_12839_21

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 19315..19857

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 177.0
  • Bit_score: 216
  • Evalue 1.70e-53
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000380C66F similarity UNIREF
DB: UNIREF100
  • Identity: 64.0
  • Coverage: 178.0
  • Bit_score: 220
  • Evalue 8.20e-55
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 62.7
  • Coverage: 177.0
  • Bit_score: 216
  • Evalue 3.40e-54

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Taxonomy

Xanthobacter autotrophicus → Xanthobacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 543
ATGCCGCGCCTCTTCACCGCCCTGGAAGTGCCCGAGACCGTCGGCATGGCCCTCTCGCTGCTGCGCGGCGGCCTGCCGGGCGCGCGCTGGATCGATGTCGAGAACTACCACATCACCCTGTGCTTCATCGGCGACCTCGACGACGCCCTCGCCCGCGACGTCGCCGAGGCGCTCGACGGGGTGAGGCGGCCGGCCTTCGAGGTGACGGTCGCCGACCTCGACGCCTTCGGCGGCGCCCGGCCCAAGGCGGTCTATGCCGCGGTGGCGCCGGTCCCGGCCCTCATGGAGCTGCAGGCGGCGCAGGAGCGGCTGCTGCGCCGCCTCGGCGTGCCCATGGAGAACCGCCAGTATACCCCGCACGTCACCCTGGCGCGCCTGCGGGTCGAGGCGACCGCCCGCCGCACCGCCGACTGGCTGGCCCTGCGCGGCGGCGGCCGGCATTCCTTCCGCGCCGAGCGCTTCGTCCTGATGTCTTCGCGTGATTCCGTCGGCGGCGGGCCCTATATCATCGAGGAGGCCTACGATCTTCAGGGGGCGGCATGA
PROTEIN sequence
Length: 181
MPRLFTALEVPETVGMALSLLRGGLPGARWIDVENYHITLCFIGDLDDALARDVAEALDGVRRPAFEVTVADLDAFGGARPKAVYAAVAPVPALMELQAAQERLLRRLGVPMENRQYTPHVTLARLRVEATARRTADWLALRGGGRHSFRAERFVLMSSRDSVGGGPYIIEEAYDLQGAA*