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berkeley_reactor_200306_biofilm_scaffold_12839

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Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_12839_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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256..1260
DNA (1005bp) protein (335aa)
LacI family transcriptional regulator n=1 Tax=Ancylobacter sp. FA202 RepID=UPI0003828B7F
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADH91564.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_12839_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1260..2021
DNA (762bp) protein (254aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|SAAS:SAAS00029496};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Glucosamine/galactosamine-6-phosphate isomerase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2N3_STAND
glucosamine/galactosamine-6-phosphate isomerase
berkeley_reactor_200306_biofilm_scaffold_12839_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2083..3270
DNA (1188bp) protein (396aa)
ABC transporter substrate-binding protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI00035F890B
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:ADH91562.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_12839_4
bacterium YEK0313, Bacteria

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3322..4404
DNA (1083bp) protein (361aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL47_9RHIZ
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:CEJ14919.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_12839_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4401..5291
DNA (891bp) protein (297aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL48_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KFG68318.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_12839_6
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5296..6129
DNA (834bp) protein (278aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HMN9_9RHIZ
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJM99977.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
binding-protein-dependent transport system inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_12839_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6242..6613
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QI47_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF02847.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_12839_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6610..6954
DNA (345bp) protein (115aa)
Transcriptional regulator n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ER97_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:CCV06625.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_12839_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6988..7113
DNA (126bp) protein (42aa)
ABC transporter permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P7D9_AZOS1
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAI76568.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_12839_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7267..7626
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4D0_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM39580.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_12839_11
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7623..7964
DNA (342bp) protein (114aa)
Putative transcriptional regulator n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFV1_AGRSH
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ADY67933.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
berkeley_reactor_200306_biofilm_scaffold_12839_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8426..9475
DNA (1050bp) protein (350aa)
Sugar ABC transporter, substrate-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6I4_9RHIZ
Sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:CCV12095.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_12839_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9593..11098
DNA (1506bp) protein (502aa)
Ribose import ATP-binding protein rbsA 1 {ECO:0000313|EMBL:CCV12096.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCV12096.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
sugar ABC transporter ATP-binding protein (EC:3.6.3.17)
Ribose import ATP-binding protein rbsA 1 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F721_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_12839_14
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11091..12062
DNA (972bp) protein (324aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F449_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:CCV12097.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
sugar ABC transporter permease protein
berkeley_reactor_200306_biofilm_scaffold_12839_15
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12059..13012
DNA (954bp) protein (318aa)
Sugar ABC transporter, permease protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YG07_9RHIZ
Sugar ABC transporter, permease protein {ECO:0000313|EMBL:EHH09313.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
sugar ABC transporter permease protein
berkeley_reactor_200306_biofilm_scaffold_12839_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13267..14169)
DNA (903bp) protein (301aa)
UPI0003CEEE1B related cluster n=1 Tax=unknown RepID=UPI0003CEEE1B
Uncharacterized protein {ECO:0000313|EMBL:CDX23788.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
amidohydrolase family protein
berkeley_reactor_200306_biofilm_scaffold_12839_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14223..15560
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6I9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV12100.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
dsd; D-serine deaminase
berkeley_reactor_200306_biofilm_scaffold_12839_18
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15571..16581
DNA (1011bp) protein (337aa)
UPI0003D03F05 related cluster n=1 Tax=unknown RepID=UPI0003D03F05
Uncharacterized protein {ECO:0000313|EMBL:CDX23747.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
deacylase
berkeley_reactor_200306_biofilm_scaffold_12839_19
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16594..17829
DNA (1236bp) protein (412aa)
UPI0003CF5F02 related cluster n=1 Tax=unknown RepID=UPI0003CF5F02
Uncharacterized protein {ECO:0000313|EMBL:ESY25890.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_12839_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18253..19299
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E50F4F
Putative oxidoreductase, NADP(H)-dependent aldo-keto reductase {ECO:0000313|EMBL:KFC68130.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase, aldo/keto reductase family
berkeley_reactor_200306_biofilm_scaffold_12839_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19315..19857
DNA (543bp) protein (181aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000380C66F
2'-5' RNA ligase
berkeley_reactor_200306_biofilm_scaffold_12839_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19854..20075
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZF8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC73993.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
berkeley_reactor_200306_biofilm_scaffold_12839_23
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20072..20491
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILN8_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF90057.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_12839_24
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20501..21346
DNA (846bp) protein (282aa)
Ribonuclease BN n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EP21_METSB
ribonuclease BN
Ribonuclease BN {ECO:0000313|EMBL:ACK49259.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_12839_25
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21405..21674
DNA (270bp) protein (90aa)
Putative prevent-host-death family protein, putative antitoxin of toxin-antitoxin system n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CBV0_METED
Bradyrhizobium elkanii strain UASWS1015 Contig90, whole genome shotgun sequence {ECO:0000313|EMBL:KIU54503.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
prevent-host-death family protein, antitoxin of toxin-antitoxin system
berkeley_reactor_200306_biofilm_scaffold_12839_26
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21754..22629)
DNA (876bp) protein (292aa)
Putative spermidine/putrescine transport system permease, componentof ATP-transporter system n=1 Tax=uncultured bacterium RepID=K2AI81_9BACT
spermidine/putrescine ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_12839_27
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22640..23563)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AI11_9BACT
ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_12839_28
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23572..23925)
DNA (354bp) protein (118aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJH2_9RHOB
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_12839_29
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24022..24666)
DNA (645bp) protein (215aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJH2_9RHOB
potA; spermidine/putrescine transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_12839_30
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24835..25980)
DNA (1146bp) protein (382aa)
Spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGP0_9RHOB
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW60296.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
twin-arginine translocation pathway signal
Displaying items 1-30 of 75 in total

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