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berkeley_reactor_200306_biofilm_scaffold_12839_30

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(24835..25980)

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGP0_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 55.7
  • Coverage: 375.0
  • Bit_score: 420
  • Evalue 1.10e-114
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW60296.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.7
  • Coverage: 375.0
  • Bit_score: 420
  • Evalue 1.60e-114
twin-arginine translocation pathway signal similarity KEGG
DB: KEGG
  • Identity: 47.5
  • Coverage: 373.0
  • Bit_score: 355
  • Evalue 1.70e-95

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Taxonomy

Rhodobacter sp. CACIA14H1 → Rhodobacter → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1146
ATGAAGGACAAGATCTGGACCCCGGGCGGCATCAGCCGCCGGTCGATCCTGAAGGCGGGCGCTGCGGCCGGCCTCGGCCTGGTCGCCTCGCCGGCGATCGTCTCGAACGCCTTCTCCTCCTCGGGGGAGGTCAATTTCATGGGCTGGTCGGGCTACGACTTCAAGAAGCTGTTCGACAGCTTCACCGCCAAGACCGGCATCAAGGTGAACTTCCTGGAGCAGCCCGACCAGGATTCGATGTTCGCCCAGTGCAAGCTCTCCCTGCAGACCGGAGCGGTGGATTTCGTCGAGCCGACGGTCGACCGCGTGGCGAGCTGGGTGGCGAACGGCATCCCCCAGCCCTGGGACGAGACCAAGATCAAGCTCGACAACTACGACCAGGCCTTCGTCACCGGCGTCGCCGGCGACACGGCCAAGGTCGACGGCAAGCGCTACTTCATCCCGAGCGTCTGGGGCACCGAGGCGCTGACCTATTCCACCACGGACGCCAACACCGAGTACGGCAAGGCGAGCCTGGCCGACCTGTTCGACCCCAAGTTCGAGGGCAAGGTGGTGGTGCGCGCCCATTCCTCGCTCGCGGCGATGGGCCGTGTGCTGGATTCGCAGGGCAAGCTGCCCAAGCCCTTCCTTGACAGCTACAAGGACGAGGCGACGATGAAGCAGATCTGGGACATCGTCCTGGCCGAGGCCATCAAGCACAAGTCCAACATCGCCCAGTTCTGGAACGGCGAGAACGACGCCCAGGCCGCCTTCCGCACCAATGGCTGCGTCCTCGGCCTGACCTGGGACTCCACCGGCTACAACCTGAAGAAGGACGGGCTGGCGTTCGGCTTCGTCGCGCCGAAGGAAGGCGCCTTCGCCTGGCTTCAGGGCTACTTCCTGATGAAGAACGCCAAGAACACCGAGCAGGCCTACGAGTTCGCCAACTTCGTCTCCACGGCCGACGGCTCCGCCCTCAATGCCACGGCCTTCTCGGCGAACCCGACCGGCAAGGGCGGCATCGACAAGATGGATGCCAAGGTCACCGAGTTCTATCATGGCGCCTATCCCGGCGATGCGTTGTCCAAGCTGTGGTGGTGGCCGATCCAGGATGCCTGGTTCGTCAAGCTGCGCGGCGAATACGCCGACAAGTGGAAGGCGGCCTGA
PROTEIN sequence
Length: 382
MKDKIWTPGGISRRSILKAGAAAGLGLVASPAIVSNAFSSSGEVNFMGWSGYDFKKLFDSFTAKTGIKVNFLEQPDQDSMFAQCKLSLQTGAVDFVEPTVDRVASWVANGIPQPWDETKIKLDNYDQAFVTGVAGDTAKVDGKRYFIPSVWGTEALTYSTTDANTEYGKASLADLFDPKFEGKVVVRAHSSLAAMGRVLDSQGKLPKPFLDSYKDEATMKQIWDIVLAEAIKHKSNIAQFWNGENDAQAAFRTNGCVLGLTWDSTGYNLKKDGLAFGFVAPKEGAFAWLQGYFLMKNAKNTEQAYEFANFVSTADGSALNATAFSANPTGKGGIDKMDAKVTEFYHGAYPGDALSKLWWWPIQDAWFVKLRGEYADKWKAA*