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berkeley_reactor_200306_biofilm_scaffold_16012_34

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 35502..36416

Top 3 Functional Annotations

Value Algorithm Source
Xylose isomerase-like TIM barrel n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JN3_MESSB similarity UNIREF
DB: UNIREF100
  • Identity: 66.4
  • Coverage: 298.0
  • Bit_score: 389
  • Evalue 2.30e-105
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:KFC67407.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.5
  • Coverage: 302.0
  • Bit_score: 397
  • Evalue 8.90e-108
xylose isomerase-like TIM barrel similarity KEGG
DB: KEGG
  • Identity: 66.4
  • Coverage: 298.0
  • Bit_score: 389
  • Evalue 6.40e-106

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Taxonomy

Devosia sp. LC5 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 915
ATGACCCCCTCCCCGATCAGTGCCGTCGGCTTCAACGCCGGCTCCGCCGACGGCGAGCTCGCCAGCCTGGAGGCGCGCCTGCGCCATCTCGCCGATGTCGGCGCCGACGTGGCGGAGATCGCGGTCACATCGCTCGACATCATCGCCGGCGGGCGTGTCATCCCCGGCCGCGCCGCGCGCCTCGCCGCCCTGACCAAGGCGTTCCCGCTACGCTACACCGTGCACGGCCTGGTCTCCTCCAACTTCATGGATCCGGAGACGGTCGGGCCCCAGCTCGCCGCGGCCAAGGCGCTGCTCGAGATCTGCGACCGCATCGGCGCCGGCATCCTGGTTCAGCACAGCGGCGCCCTGCGCGCCGACCAGGGCGCCATCCGCGCGACGGCGGGCCGGCTGGAGGACGACACGCTGCTCGCGCTCGCCGAGGCCGCCCGCCCCTACGACGTGCGCATCGCCCTGGAGAACATCTACACTACCGAGTCCGGCCAGTATCGCCGCACGCCGAGCGAGGTCGCCGCCGCCGTGAAGCGGCTGGACCATCCCAACCTGGTCGCCCTGATCGACTTCAGCCACGCCTATATCGAATCCACCTATCGCAGCCTCGATTTCCGCGCCGAGCTCCGGGCCATGGCGCCGGTCACCGGCCATCTCCACGTGCACGATTCCTTCGGCCAGCCCGCCGGCCGCACGCCGTTCTTCGTCCGCCAGGAGGCGACCGCCCTCGGCCTCGGCGACCTGCACATGCCGCTCGGCTGGGGCGACATCCCCTGGGCCGAGATCTTCGCCGAGCTGACCTTCCTGCCCGGCACGGTGCTGCTGATGGAGATCGACCACCGCTACGACGCCGAGCACGCCGACTGCCTGGCGCAGGCCCGCCGGCTCGCCGCCGCCGTCAATGGCCGGGCGCTCGCCGCCTGA
PROTEIN sequence
Length: 305
MTPSPISAVGFNAGSADGELASLEARLRHLADVGADVAEIAVTSLDIIAGGRVIPGRAARLAALTKAFPLRYTVHGLVSSNFMDPETVGPQLAAAKALLEICDRIGAGILVQHSGALRADQGAIRATAGRLEDDTLLALAEAARPYDVRIALENIYTTESGQYRRTPSEVAAAVKRLDHPNLVALIDFSHAYIESTYRSLDFRAELRAMAPVTGHLHVHDSFGQPAGRTPFFVRQEATALGLGDLHMPLGWGDIPWAEIFAELTFLPGTVLLMEIDHRYDAEHADCLAQARRLAAAVNGRALAA*